Magnesium in PDB 6g7d: Structure of MET1 From Mycobacterium Hassiacum in Complex with Sam and Glycerol.

The structure of Structure of MET1 From Mycobacterium Hassiacum in Complex with Sam and Glycerol., PDB code: 6g7d was solved by P.J.B.Pereira, J.Ripoll-Rozada, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.22 / 1.35
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	113.673, 113.673, 41.186, 90.00, 90.00, 120.00
R / Rfree (%)	14.1 / 17.2

The structure of Structure of MET1 From Mycobacterium Hassiacum in Complex with Sam and Glycerol. also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Magnesium atom in the Structure of MET1 From Mycobacterium Hassiacum in Complex with Sam and Glycerol. (pdb code 6g7d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of MET1 From Mycobacterium Hassiacum in Complex with Sam and Glycerol., PDB code: 6g7d:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of MET1 From Mycobacterium Hassiacum in Complex with Sam and Glycerol.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of MET1 From Mycobacterium Hassiacum in Complex with Sam and Glycerol. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg304 b:15.2 occ:1.00 O A:HOH420 2.0 15.2 1.0 OD1 A:ASP141 2.0 15.3 1.0 OD2 A:ASP170 2.1 15.3 1.0 ND1 A:HIS169 2.1 14.6 1.0 O A:HOH415 2.1 16.7 1.0 O3 A:GOL303 2.2 19.4 1.0 CE1 A:HIS169 3.0 15.1 1.0 CG A:ASP141 3.0 14.8 1.0 CG A:ASP170 3.1 17.9 1.0 CG A:HIS169 3.3 14.6 1.0 OD2 A:ASP141 3.3 16.1 1.0 C3 A:GOL303 3.3 24.2 1.0 OD1 A:ASP170 3.4 21.2 1.0 CB A:HIS169 3.7 14.4 1.0 O A:HOH403 4.1 30.6 1.0 O A:PHE20 4.1 17.9 1.0 O2 A:GOL303 4.1 28.2 1.0 NE2 A:HIS144 4.1 24.3 1.0 NE2 A:HIS169 4.1 16.7 1.0 C2 A:GOL303 4.2 24.8 1.0 CD2 A:HIS169 4.3 16.1 1.0 CB A:ASP141 4.4 13.7 1.0 CB A:ASP170 4.4 15.3 1.0 O A:HOH580 4.7 23.9 1.0 CE1 A:HIS144 4.7 22.4 1.0 CB A:PHE20 4.8 14.8 1.0 CA A:ASP141 4.8 11.9 1.0 O A:ASP141 4.9 14.3 1.0 N A:ASP170 4.9 14.6 1.0

Magnesium binding site 2 out of 2 in the Structure of MET1 From Mycobacterium Hassiacum in Complex with Sam and Glycerol.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of MET1 From Mycobacterium Hassiacum in Complex with Sam and Glycerol. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg305 b:19.4 occ:1.00 O A:HOH508 2.0 23.3 1.0 O A:HOH568 2.0 19.4 1.0 O A:HOH555 2.1 23.9 1.0 O A:HOH435 2.1 20.5 1.0 OD2 A:ASP112 2.1 17.6 1.0 CG A:ASP112 3.1 16.5 1.0 OD1 A:ASP112 3.4 16.4 1.0 O A:HOH520 4.3 29.0 1.0 CB A:ASP112 4.5 15.7 1.0

J.Ripoll-Rozada, M.Costa, J.A.Manso, A.Maranha, V.Miranda, A.Sequeira, M.R.Ventura, S.Macedo-Ribeiro, P.J.B.Pereira, N.Empadinhas. Biosynthesis of Mycobacterial Methylmannose Polysaccharides Requires A Unique 1-O-Methyltransferase Specific For 3-O-Methylated Mannosides. Proc. Natl. Acad. Sci. V. 116 835 2019U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30606802
DOI: 10.1073/PNAS.1813450116