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Magnesium in PDB 6g9v: Crystal Structure of Aspergillus Fumigatus Udp-N-Acetylglucosamine Pyrophosphorylase(AFUAP1) in Complex with Udpglcnac, Pyrophosphate and MG2+

Enzymatic activity of Crystal Structure of Aspergillus Fumigatus Udp-N-Acetylglucosamine Pyrophosphorylase(AFUAP1) in Complex with Udpglcnac, Pyrophosphate and MG2+

All present enzymatic activity of Crystal Structure of Aspergillus Fumigatus Udp-N-Acetylglucosamine Pyrophosphorylase(AFUAP1) in Complex with Udpglcnac, Pyrophosphate and MG2+:
2.7.7.23;

Protein crystallography data

The structure of Crystal Structure of Aspergillus Fumigatus Udp-N-Acetylglucosamine Pyrophosphorylase(AFUAP1) in Complex with Udpglcnac, Pyrophosphate and MG2+, PDB code: 6g9v was solved by O.G.Raimi, R.Hurtado-Guerrero, V.Borodin, M.Urbaniak, M.Ferguson, D.Vanaalten, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.97 / 1.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.195, 139.839, 144.615, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 24

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Aspergillus Fumigatus Udp-N-Acetylglucosamine Pyrophosphorylase(AFUAP1) in Complex with Udpglcnac, Pyrophosphate and MG2+ (pdb code 6g9v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Aspergillus Fumigatus Udp-N-Acetylglucosamine Pyrophosphorylase(AFUAP1) in Complex with Udpglcnac, Pyrophosphate and MG2+, PDB code: 6g9v:

Magnesium binding site 1 out of 1 in 6g9v

Go back to Magnesium Binding Sites List in 6g9v
Magnesium binding site 1 out of 1 in the Crystal Structure of Aspergillus Fumigatus Udp-N-Acetylglucosamine Pyrophosphorylase(AFUAP1) in Complex with Udpglcnac, Pyrophosphate and MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Aspergillus Fumigatus Udp-N-Acetylglucosamine Pyrophosphorylase(AFUAP1) in Complex with Udpglcnac, Pyrophosphate and MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg603

b:33.7
occ:1.00
 O1A B:UD1601 2.0 19.9 0.5
O B:HOH903 2.1 43.2 1.0
O2A B:UD1601 2.3 17.2 0.5
O B:HOH780 2.4 39.6 1.0
O22 B:PPV602 2.6 19.5 0.5
O31 B:PPV602 2.6 16.9 0.5
PA B:UD1601 3.4 21.8 0.5
P2 B:PPV602 3.5 19.1 0.5
P1 B:PPV602 3.5 17.4 0.5
PA B:UD1601 3.7 18.3 0.5
O32 B:PPV602 3.8 20.0 0.5
O B:HOH717 3.8 39.9 1.0
O21 B:PPV602 3.9 17.1 0.5
OPP B:PPV602 3.9 18.0 0.5
O2A B:UD1601 4.1 21.2 0.5
O B:HOH753 4.2 36.5 1.0
O3A B:UD1601 4.2 19.1 0.5
O2B B:UD1601 4.3 19.9 1.0
O5B B:UD1601 4.4 20.4 0.5
O5B B:UD1601 4.4 18.6 0.5
O3A B:UD1601 4.4 20.7 0.5
OE2 B:GLU407 4.6 29.7 1.0
NH2 B:ARG141 4.8 28.9 1.0
O1A B:UD1601 4.8 18.6 0.5
PB B:UD1601 4.8 18.7 1.0
C6 B:UD1601 4.9 17.1 1.0
C5 B:UD1601 5.0 17.4 1.0

Reference:

O.G.Raimi, R.Hurtado-Guerrero, V.Borodin, M.Urbaniak, M.Ferguson, D.Van Aalten. Crystal Structure of Aspergillus Fumigatus Udp-N-Acetylglucosamine Pyrophosphorylase(AFUAP1) in Complex with Udpglcnac, Pyrophosphate and MG2+ To Be Published.
Page generated: Tue Oct 1 01:03:07 2024

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