Magnesium in PDB 6gb4: The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate

Enzymatic activity of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate

All present enzymatic activity of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate:
2.10.1.1; 2.7.7.75;

Protein crystallography data

The structure of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate, PDB code: 6gb4 was solved by J.Krausze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 61.29 / 1.65
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 65.310, 122.580, 133.000, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 21.8

Other elements in 6gb4:

The structure of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate also contains other interesting chemical elements:

Molybdenum (Mo) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate (pdb code 6gb4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate, PDB code: 6gb4:

Magnesium binding site 1 out of 1 in 6gb4

Go back to Magnesium Binding Sites List in 6gb4
Magnesium binding site 1 out of 1 in the The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of Variant S328A of the Mo-Insertase Domain CNX1E From Arabidopsis Thaliana in Complex with Amp and Molybdate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:24.7
occ:1.00
O2P A:AMP501 1.9 25.2 1.0
O A:HOH697 2.0 26.0 1.0
O A:HOH639 2.1 24.1 1.0
O A:HOH743 2.1 25.2 1.0
O A:HOH752 2.1 26.2 1.0
O A:HOH604 2.1 29.9 1.0
H A:GLY267 3.0 26.1 0.0
P A:AMP501 3.2 31.7 1.0
HA2 A:GLY199 3.7 26.8 0.0
O1P A:AMP501 3.7 38.2 1.0
H8 A:AMP501 3.8 25.2 0.0
H2' A:AMP501 3.8 24.1 0.0
O5' A:AMP501 3.8 27.2 1.0
N A:GLY267 3.9 25.9 1.0
OE2 A:GLU201 4.0 33.7 1.0
HA2 A:GLY267 4.1 26.4 0.0
HA3 A:GLY199 4.1 26.3 0.0
OE1 A:GLU201 4.1 32.1 1.0
O A:THR198 4.2 24.8 1.0
HA3 A:GLY266 4.2 24.8 0.0
OD2 A:ASP242 4.3 31.6 1.0
OD1 A:ASP242 4.3 29.6 1.0
CA A:GLY199 4.4 26.4 1.0
OD1 A:ASP274 4.4 35.0 1.0
CD A:GLU201 4.4 38.6 1.0
O3P A:AMP501 4.5 38.4 1.0
CA A:GLY267 4.6 26.1 1.0
OG1 A:THR198 4.6 27.4 1.0
C8 A:AMP501 4.7 25.2 1.0
CG A:ASP242 4.7 29.7 1.0
HA2 A:GLY266 4.7 25.3 0.0
CA A:GLY266 4.8 24.9 1.0
C A:THR198 4.8 26.9 1.0
C A:GLY266 4.8 29.5 1.0
C2' A:AMP501 4.9 24.2 1.0
O A:HOH686 4.9 41.2 1.0
H3' A:AMP501 4.9 25.2 0.0
N A:GLY199 5.0 25.3 1.0

Reference:

J.Krausze, T.W.Hercher, D.Zwerschke, M.L.Kirk, W.Blankenfeldt, R.R.Mendel, T.Kruse. The Functional Principle of Eukaryotic Molybdenum Insertases. Biochem. J. V. 475 1739 2018.
ISSN: ESSN 1470-8728
PubMed: 29717023
DOI: 10.1042/BCJ20170935
Page generated: Mon Dec 14 22:44:31 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy