Magnesium in PDB 6ge8: Crystal Structure of Mycobacterium Tuberculosis Bioa
Enzymatic activity of Crystal Structure of Mycobacterium Tuberculosis Bioa
All present enzymatic activity of Crystal Structure of Mycobacterium Tuberculosis Bioa:
2.6.1.62;
Protein crystallography data
The structure of Crystal Structure of Mycobacterium Tuberculosis Bioa, PDB code: 6ge8
was solved by
A.Ekstrom,
D.J.Campopiano,
J.Marles-Wright,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.85 /
1.87
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
62.748,
66.559,
202.504,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16.4 /
20.6
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of Mycobacterium Tuberculosis Bioa
(pdb code 6ge8). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the
Crystal Structure of Mycobacterium Tuberculosis Bioa, PDB code: 6ge8:
Jump to Magnesium binding site number:
1;
2;
Magnesium binding site 1 out
of 2 in 6ge8
Go back to
Magnesium Binding Sites List in 6ge8
Magnesium binding site 1 out
of 2 in the Crystal Structure of Mycobacterium Tuberculosis Bioa
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Mycobacterium Tuberculosis Bioa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg502
b:74.4
occ:1.00
|
O
|
A:HOH659
|
2.2
|
32.6
|
1.0
|
O
|
A:HOH660
|
2.3
|
78.5
|
1.0
|
O
|
A:HOH729
|
2.4
|
63.7
|
1.0
|
O
|
A:VAL108
|
2.7
|
36.9
|
1.0
|
O
|
A:HOH606
|
2.7
|
65.0
|
1.0
|
O
|
A:HOH755
|
2.8
|
58.1
|
1.0
|
HA
|
A:ALA113
|
3.3
|
67.3
|
1.0
|
HG13
|
A:VAL108
|
3.3
|
58.1
|
1.0
|
H
|
A:GLY114
|
3.4
|
44.6
|
1.0
|
O
|
A:LEU115
|
3.8
|
34.0
|
1.0
|
C
|
A:VAL108
|
3.8
|
41.1
|
1.0
|
HA
|
A:ASP109
|
3.9
|
52.0
|
1.0
|
H
|
A:LEU115
|
4.0
|
37.1
|
1.0
|
N
|
A:GLY114
|
4.1
|
37.2
|
1.0
|
HG12
|
A:VAL108
|
4.1
|
58.1
|
1.0
|
CG1
|
A:VAL108
|
4.1
|
48.4
|
1.0
|
CA
|
A:ALA113
|
4.2
|
56.1
|
1.0
|
O
|
A:THR111
|
4.2
|
33.3
|
1.0
|
O
|
A:PRO112
|
4.2
|
34.3
|
1.0
|
HA
|
A:VAL108
|
4.5
|
38.6
|
1.0
|
N
|
A:LEU115
|
4.5
|
30.9
|
1.0
|
C
|
A:LEU115
|
4.6
|
33.0
|
1.0
|
C
|
A:ALA113
|
4.6
|
42.9
|
1.0
|
CA
|
A:ASP109
|
4.6
|
43.4
|
1.0
|
HG1
|
A:THR111
|
4.7
|
33.6
|
1.0
|
HG11
|
A:VAL108
|
4.7
|
58.1
|
1.0
|
CA
|
A:VAL108
|
4.7
|
32.1
|
1.0
|
N
|
A:ASP109
|
4.7
|
29.0
|
1.0
|
O
|
A:ASP109
|
4.8
|
40.8
|
1.0
|
C
|
A:PRO112
|
4.8
|
32.6
|
1.0
|
HB2
|
A:LEU115
|
4.9
|
38.1
|
1.0
|
C
|
A:ASP109
|
4.9
|
35.4
|
1.0
|
HA
|
A:ASP116
|
4.9
|
51.7
|
1.0
|
OG1
|
A:THR111
|
4.9
|
28.0
|
1.0
|
N
|
A:ALA113
|
4.9
|
35.2
|
1.0
|
HB3
|
A:ASP116
|
4.9
|
86.3
|
1.0
|
|
Magnesium binding site 2 out
of 2 in 6ge8
Go back to
Magnesium Binding Sites List in 6ge8
Magnesium binding site 2 out
of 2 in the Crystal Structure of Mycobacterium Tuberculosis Bioa
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Mycobacterium Tuberculosis Bioa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg502
b:35.7
occ:1.00
|
HB2
|
B:CYS168
|
1.7
|
72.6
|
1.0
|
H
|
B:HIS158
|
2.3
|
29.3
|
1.0
|
CB
|
B:CYS168
|
2.6
|
60.5
|
1.0
|
HA
|
B:MET165
|
3.0
|
34.2
|
1.0
|
O
|
B:ALA164
|
3.0
|
30.8
|
1.0
|
N
|
B:HIS158
|
3.1
|
24.4
|
1.0
|
O
|
B:GLY159
|
3.1
|
29.4
|
1.0
|
HB3
|
B:CYS168
|
3.2
|
72.6
|
1.0
|
HA
|
B:CYS168
|
3.2
|
44.6
|
1.0
|
HA
|
B:TYR157
|
3.2
|
38.2
|
1.0
|
H
|
B:GLY159
|
3.2
|
36.9
|
1.0
|
CA
|
B:CYS168
|
3.3
|
37.1
|
1.0
|
H
|
B:CYS168
|
3.3
|
38.5
|
1.0
|
HB2
|
B:HIS158
|
3.4
|
30.7
|
1.0
|
N
|
B:CYS168
|
3.5
|
32.0
|
1.0
|
HD1
|
B:TYR157
|
3.5
|
44.5
|
1.0
|
N
|
B:GLY159
|
3.6
|
30.7
|
1.0
|
SG
|
B:CYS168
|
3.7
|
60.1
|
1.0
|
CD1
|
B:TYR157
|
3.8
|
37.1
|
1.0
|
C
|
B:ALA164
|
3.8
|
24.1
|
1.0
|
CA
|
B:MET165
|
3.9
|
28.5
|
1.0
|
CA
|
B:HIS158
|
3.9
|
23.1
|
1.0
|
CA
|
B:TYR157
|
4.0
|
31.8
|
1.0
|
C
|
B:HIS158
|
4.0
|
22.7
|
1.0
|
C
|
B:TYR157
|
4.0
|
33.4
|
1.0
|
CB
|
B:HIS158
|
4.1
|
25.6
|
1.0
|
C
|
B:GLY159
|
4.1
|
35.8
|
1.0
|
CE1
|
B:TYR157
|
4.2
|
34.3
|
1.0
|
HE1
|
B:TYR157
|
4.2
|
41.2
|
1.0
|
N
|
B:MET165
|
4.2
|
22.3
|
1.0
|
HD2
|
B:HIS158
|
4.2
|
51.8
|
1.0
|
HB1
|
B:ALA164
|
4.2
|
37.8
|
1.0
|
O
|
B:MET165
|
4.3
|
24.9
|
1.0
|
HG13
|
B:ILE167
|
4.3
|
34.7
|
1.0
|
C
|
B:MET165
|
4.4
|
35.5
|
1.0
|
CG
|
B:TYR157
|
4.4
|
41.0
|
1.0
|
C
|
B:ILE167
|
4.4
|
36.5
|
1.0
|
CA
|
B:GLY159
|
4.5
|
31.7
|
1.0
|
HG2
|
B:MET165
|
4.6
|
61.9
|
1.0
|
H
|
B:ILE167
|
4.6
|
33.5
|
1.0
|
C
|
B:CYS168
|
4.8
|
36.1
|
1.0
|
CB
|
B:TYR157
|
4.8
|
34.0
|
1.0
|
HG
|
B:CYS168
|
4.8
|
72.2
|
1.0
|
HA
|
B:HIS158
|
4.8
|
27.7
|
1.0
|
CD2
|
B:HIS158
|
4.8
|
43.2
|
1.0
|
CG
|
B:HIS158
|
4.8
|
28.2
|
1.0
|
HB3
|
B:HIS158
|
4.8
|
30.7
|
1.0
|
O
|
B:HIS158
|
4.9
|
28.2
|
1.0
|
H
|
B:MET165
|
4.9
|
26.7
|
1.0
|
CA
|
B:ALA164
|
4.9
|
31.9
|
1.0
|
CB
|
B:ALA164
|
4.9
|
31.5
|
1.0
|
O
|
B:GLY156
|
4.9
|
26.7
|
1.0
|
O
|
B:ILE167
|
4.9
|
31.5
|
1.0
|
|
Reference:
J.Marles-Wright,
A.Ekstrom,
D.J.Campopiano,
J.Marles-Wright.
N/A N/A.
Page generated: Tue Oct 1 01:06:17 2024
|