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Magnesium in PDB 6gen: Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution.

Enzymatic activity of Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution.

All present enzymatic activity of Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution.:
3.6.4.12;

Other elements in 6gen:

The structure of Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution. also contains other interesting chemical elements:

Fluorine (F) 6 atoms
Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution. (pdb code 6gen). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution., PDB code: 6gen:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 6gen

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Magnesium binding site 1 out of 8 in the Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mg1603

b:0.3
occ:1.00
 F3 M:BEF1602 2.2 0.1 1.0
OD1 M:ASP824 3.0 0.8 1.0
O3B M:ADP1601 3.1 0.6 1.0
O3A M:ADP1601 3.4 0.6 1.0
OD2 M:ASP824 3.4 0.8 1.0
CG M:ASP824 3.6 0.8 1.0
BE M:BEF1602 3.6 0.1 1.0
PB M:ADP1601 3.9 0.6 1.0
NZ M:LYS727 4.1 0.2 1.0
F1 M:BEF1602 4.1 0.1 1.0
O1A M:ADP1601 4.3 0.6 1.0
PA M:ADP1601 4.4 0.6 1.0
OG1 M:THR728 4.5 54.8 1.0
O1B M:ADP1601 4.5 0.6 1.0
CE M:LYS727 4.7 0.2 1.0
F2 M:BEF1602 4.7 0.1 1.0
O2A M:ADP1601 4.9 0.6 1.0
O M:GLY1327 5.0 0.2 1.0
CB M:ASP824 5.0 0.8 1.0

Magnesium binding site 2 out of 8 in 6gen

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Magnesium binding site 2 out of 8 in the Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Mg503

b:1.0
occ:1.00
 O1B R:ADP501 2.2 0.0 1.0
F3 R:BEF502 2.4 0.9 1.0
PB R:ADP501 3.6 0.0 1.0
BE R:BEF502 3.6 0.9 1.0
O3B R:ADP501 4.1 0.0 1.0
F1 R:BEF502 4.2 0.9 1.0
OD2 R:ASP192 4.2 0.1 1.0
OD1 R:ASP9 4.3 0.2 1.0
CG2 R:VAL133 4.3 0.6 1.0
O2B R:ADP501 4.4 0.0 1.0
O3A R:ADP501 4.5 0.0 1.0
O R:ASN10 4.6 0.7 1.0
F2 R:BEF502 4.8 0.9 1.0
CG R:ASP9 5.0 0.2 1.0

Magnesium binding site 3 out of 8 in 6gen

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Magnesium binding site 3 out of 8 in the Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
U:Mg501

b:1.0
occ:1.00
 O3B T:ADP501 2.2 0.4 1.0
OE2 U:GLU314 3.5 0.5 1.0
NH1 U:ARG350 3.6 1.0 1.0
O U:ASN310 3.6 0.7 1.0
PB T:ADP501 3.6 0.4 1.0
O2B T:ADP501 4.2 0.4 1.0
NH2 U:ARG350 4.2 1.0 1.0
OG1 T:THR86 4.2 75.4 1.0
C U:ASN310 4.3 0.7 1.0
CD U:GLU314 4.3 0.5 1.0
O2A T:ADP501 4.3 0.4 1.0
CZ U:ARG350 4.3 1.0 1.0
O1B T:ADP501 4.4 0.4 1.0
OE1 U:GLU314 4.4 0.5 1.0
NH1 T:ARG413 4.5 76.6 1.0
OE1 T:GLU312 4.5 64.2 1.0
OE2 T:GLU312 4.6 64.2 1.0
O3A T:ADP501 4.7 0.4 1.0
CB U:ASN310 4.8 0.7 1.0
N U:ARG311 4.8 0.3 1.0
CA U:ARG311 4.8 0.3 1.0

Magnesium binding site 4 out of 8 in 6gen

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Magnesium binding site 4 out of 8 in the Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
U:Mg503

b:0.9
occ:1.00
 O2B U:ADP502 2.7 0.6 1.0
OE2 U:GLU297 3.0 0.3 1.0
OG1 U:THR82 3.0 0.1 1.0
O3B U:ADP502 3.2 0.6 1.0
PB U:ADP502 3.4 0.6 1.0
ND2 U:ASN326 3.8 0.4 1.0
CG U:ASN326 3.8 0.4 1.0
OD1 U:ASN326 3.9 0.4 1.0
OE2 V:GLU329 4.0 0.8 1.0
CD U:GLU297 4.1 0.3 1.0
O1B U:ADP502 4.4 0.6 1.0
CB U:THR82 4.4 0.1 1.0
CE U:LYS81 4.4 0.3 1.0
OD1 U:ASP296 4.5 0.2 1.0
CB U:ASN326 4.5 0.4 1.0
O1A U:ADP502 4.5 0.6 1.0
OE1 V:GLU329 4.5 0.8 1.0
OE1 U:GLU297 4.6 0.3 1.0
CD V:GLU329 4.7 0.8 1.0
O3A U:ADP502 4.7 0.6 1.0
CG U:LYS81 4.8 0.3 1.0
PA U:ADP502 4.9 0.6 1.0
O2A U:ADP502 5.0 0.6 1.0

Magnesium binding site 5 out of 8 in 6gen

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Magnesium binding site 5 out of 8 in the Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
V:Mg502

b:0.5
occ:1.00
 OG1 V:THR86 2.4 0.7 1.0
O3B V:ADP501 2.9 0.8 1.0
O2B V:ADP501 3.3 0.8 1.0
PB V:ADP501 3.6 0.8 1.0
CB V:THR86 3.8 0.7 1.0
NZ V:LYS85 4.3 0.2 1.0
OD1 V:ASP311 4.3 0.8 1.0
OE1 V:GLU312 4.3 0.3 1.0
CG2 V:THR86 4.3 0.7 1.0
O1A V:ADP501 4.6 0.8 1.0
O1B V:ADP501 4.6 0.8 1.0
N V:THR86 4.7 0.7 1.0
CA V:THR86 4.8 0.7 1.0
O3A V:ADP501 4.9 0.8 1.0
OE2 W:GLU314 4.9 0.1 1.0
OE2 V:GLU312 4.9 0.3 1.0

Magnesium binding site 6 out of 8 in 6gen

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Magnesium binding site 6 out of 8 in the Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
W:Mg502

b:0.2
occ:1.00
 O3B W:ADP501 2.4 0.5 1.0
OE2 W:GLU297 2.8 0.4 1.0
OG1 W:THR82 3.1 0.2 1.0
PB W:ADP501 3.8 0.5 1.0
ND2 W:ASN326 3.9 0.0 1.0
CD W:GLU297 4.0 0.4 1.0
CG W:ASN326 4.0 0.0 1.0
OD1 W:ASN326 4.2 0.0 1.0
O2B W:ADP501 4.3 0.5 1.0
CB W:THR82 4.4 0.2 1.0
O1A W:ADP501 4.5 0.5 1.0
OD1 W:ASP296 4.5 0.2 1.0
OE1 W:GLU297 4.5 0.4 1.0
O1B W:ADP501 4.5 0.5 1.0
NH2 X:ARG366 4.7 72.8 1.0
CB W:ASN326 4.7 0.0 1.0
O3A W:ADP501 4.8 0.5 1.0
O2A W:ADP501 4.9 0.5 1.0
CG2 W:THR82 4.9 0.2 1.0
CE W:LYS81 4.9 0.8 1.0
PA W:ADP501 4.9 0.5 1.0

Magnesium binding site 7 out of 8 in 6gen

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Magnesium binding site 7 out of 8 in the Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Mg501

b:0.7
occ:1.00
 O3B X:ADP501 2.2 0.1 1.0
PB X:ADP501 3.1 0.1 1.0
O2B X:ADP501 3.1 0.1 1.0
OE1 Y:GLU314 3.2 97.4 1.0
OE2 Y:GLU314 3.3 97.4 1.0
CD Y:GLU314 3.6 97.4 1.0
OG1 X:THR86 3.7 63.8 1.0
O3A X:ADP501 3.8 0.1 1.0
O2A X:ADP501 3.9 0.1 1.0
CD Y:ARG311 4.3 87.2 1.0
O Y:ASN310 4.4 88.2 1.0
O1B X:ADP501 4.5 0.1 1.0
OE1 X:GLU312 4.5 0.0 1.0
PA X:ADP501 4.5 0.1 1.0
OE2 X:GLU312 4.6 0.0 1.0
NH1 X:ARG413 4.7 64.7 1.0
NH1 Y:ARG350 4.8 0.9 1.0
NZ X:LYS85 4.9 62.2 1.0
CA Y:ARG311 4.9 87.2 1.0
ND2 X:ASN341 4.9 0.9 1.0
CB X:THR86 5.0 63.8 1.0
CD X:GLU312 5.0 0.0 1.0

Magnesium binding site 8 out of 8 in 6gen

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Magnesium binding site 8 out of 8 in the Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Chromatin Remodeller-Nucleosome Complex at 4.5 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Mg503

b:0.2
occ:1.00
 O2B Y:ADP502 2.4 0.9 1.0
OE2 Y:GLU297 2.5 84.2 1.0
O3B Y:ADP502 3.3 0.9 1.0
PB Y:ADP502 3.4 0.9 1.0
ND2 Y:ASN326 3.4 90.8 1.0
CD Y:GLU297 3.6 84.2 1.0
O2A Y:ADP502 3.8 0.9 1.0
CG Y:ASN326 3.8 90.8 1.0
OG1 Y:THR82 3.9 0.9 1.0
OE1 Y:GLU297 4.0 84.2 1.0
OD1 Y:ASN326 4.1 90.8 1.0
O3A Y:ADP502 4.4 0.9 1.0
O1B Y:ADP502 4.4 0.9 1.0
PA Y:ADP502 4.5 0.9 1.0
CB Y:ASN326 4.6 90.8 1.0
O1A Y:ADP502 4.8 0.9 1.0
CG Y:GLU297 4.8 84.2 1.0
OD1 Y:ASP296 4.9 86.2 1.0

Reference:

O.Willhoft, M.Ghoneim, C.L.Lin, E.Y.D.Chua, M.Wilkinson, Y.Chaban, R.Ayala, E.A.Mccormack, L.Ocloo, D.S.Rueda, D.B.Wigley. Structure and Dynamics of the Yeast SWR1-Nucleosome Complex. Science V. 362 2018.
ISSN: ESSN 1095-9203
PubMed: 30309918
DOI: 10.1126/SCIENCE.AAT7716
Page generated: Tue Oct 1 01:07:06 2024

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