Magnesium in PDB 6gfr: Cyanobacterial Gapdh with Nad

The structure of Cyanobacterial Gapdh with Nad, PDB code: 6gfr was solved by C.R.Mcfarlane, J.W.Murray, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	69.93 / 1.92
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	139.865, 139.865, 80.501, 90.00, 90.00, 90.00
R / Rfree (%)	16.5 / 20.6

The binding sites of Magnesium atom in the Cyanobacterial Gapdh with Nad (pdb code 6gfr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cyanobacterial Gapdh with Nad, PDB code: 6gfr:

Magnesium binding site 1 out of 1 in the Cyanobacterial Gapdh with Nad


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cyanobacterial Gapdh with Nad within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1003 b:43.6 occ:1.00 O A:GLY305 2.7 32.4 1.0 ND2 A:ASN307 2.7 26.1 1.0 C A:GLY305 3.6 29.7 1.0 CG A:ASN307 3.8 33.3 1.0 CB A:ASN307 3.9 31.2 1.0 O A:HOH1287 3.9 36.9 1.0 O A:HOH1242 4.0 59.9 1.0 CA A:GLY305 4.0 27.0 1.0 N A:ASN307 4.1 29.2 1.0 CA A:ASN307 4.6 33.2 1.0 N A:GLY306 4.6 28.8 1.0 O A:LEU304 4.8 25.1 1.0 OD1 A:ASN307 4.9 32.5 1.0 C A:GLY306 5.0 30.2 1.0

C.R.Mcfarlane, N.R.Shah, B.V.Kabasakal, B.Echeverria, C.A.R.Cotton, D.Bubeck, J.W.Murray. Structural Basis of Light-Induced Redox Regulation in the Calvin-Benson Cycle in Cyanobacteria. Proc.Natl.Acad.Sci.Usa V. 116 20984 2019.
ISSN: ESSN 1091-6490
PubMed: 31570616
DOI: 10.1073/PNAS.1906722116