Magnesium in PDB 6ghb: Crystal Structure of Spx in Complex with Yjbh (Oxidized)

The structure of Crystal Structure of Spx in Complex with Yjbh (Oxidized), PDB code: 6ghb was solved by W.Awad, D.T.Logan, C.Von Wachenfeldt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.43 / 3.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	85.596, 88.704, 117.467, 90.00, 90.00, 90.00
R / Rfree (%)	22.2 / 26.6

The binding sites of Magnesium atom in the Crystal Structure of Spx in Complex with Yjbh (Oxidized) (pdb code 6ghb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Spx in Complex with Yjbh (Oxidized), PDB code: 6ghb:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Spx in Complex with Yjbh (Oxidized)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Spx in Complex with Yjbh (Oxidized) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:65.7 occ:1.00 OE1 B:GLU225 3.4 73.4 1.0 CE1 B:HIS230 3.8 70.4 1.0 CD B:GLU225 3.8 71.7 1.0 N B:PHE229 3.8 61.6 1.0 O B:ALA224 3.9 58.5 1.0 OE2 B:GLU225 3.9 73.5 1.0 C B:GLY228 3.9 60.5 1.0 ND1 B:HIS230 4.1 71.1 1.0 O B:GLY228 4.1 62.5 1.0 CA B:GLU225 4.1 57.9 1.0 CA B:PHE229 4.1 64.3 1.0 C B:ALA224 4.1 57.9 1.0 N B:GLU225 4.2 57.0 1.0 C B:PHE229 4.5 64.0 1.0 CA B:GLY228 4.5 60.2 1.0 O B:PHE229 4.7 62.0 1.0 CB B:ALA224 4.7 54.4 1.0 CG B:GLU225 4.8 66.6 1.0 NE2 B:HIS230 4.8 68.6 1.0 CB B:GLU225 4.9 60.2 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Spx in Complex with Yjbh (Oxidized)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Spx in Complex with Yjbh (Oxidized) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg301 b:66.8 occ:1.00 CE1 D:HIS230 3.3 83.9 1.0 OE2 D:GLU225 3.4 79.5 1.0 O D:ALA224 3.5 67.3 1.0 ND1 D:HIS230 3.8 84.0 1.0 C D:ALA224 3.8 65.2 1.0 CA D:GLU225 3.9 65.3 1.0 CD D:GLU225 4.0 79.3 1.0 N D:GLU225 4.0 60.7 1.0 N D:PHE229 4.1 77.1 1.0 C D:GLY228 4.2 73.9 1.0 CB D:ALA224 4.3 67.5 1.0 NE2 D:HIS230 4.4 82.0 1.0 OE1 D:GLU225 4.4 82.0 1.0 O D:PHE229 4.4 76.0 1.0 CA D:PHE229 4.4 77.9 1.0 O D:GLY228 4.5 74.2 1.0 C D:PHE229 4.5 77.1 1.0 CA D:ALA224 4.7 64.9 1.0 CA D:GLY228 4.7 73.4 1.0 CB D:GLU225 4.7 65.5 1.0 CG D:GLU225 4.8 73.3 1.0 C D:GLU225 4.8 65.4 1.0

W.Awad, Y.Al-Eryani, S.Ekstrom, D.T.Logan, C.Von Wachenfeldt. Structural Basis For Yjbh Adaptor-Mediated Recognition of Transcription Factor Spx. Structure V. 27 923 2019.
ISSN: ISSN 0969-2126
PubMed: 30982633
DOI: 10.1016/J.STR.2019.03.009