Magnesium in PDB 6giw: Water-Soluble Chlorophyll Protein (Wscp) From Lepidium Virginicum (Mutation L91P) with Chlorophyll-A

The structure of Water-Soluble Chlorophyll Protein (Wscp) From Lepidium Virginicum (Mutation L91P) with Chlorophyll-A, PDB code: 6giw was solved by D.M.Palm, A.Agostini, V.Averesch, P.Girr, M.Werwie, S.Takahashi, H.Satoh, E.Jaenicke, H.Paulsen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.73 / 2.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	72.720, 81.710, 121.960, 90.00, 90.00, 90.00
R / Rfree (%)	23.4 / 27.7

The binding sites of Magnesium atom in the Water-Soluble Chlorophyll Protein (Wscp) From Lepidium Virginicum (Mutation L91P) with Chlorophyll-A (pdb code 6giw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Water-Soluble Chlorophyll Protein (Wscp) From Lepidium Virginicum (Mutation L91P) with Chlorophyll-A, PDB code: 6giw:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Water-Soluble Chlorophyll Protein (Wscp) From Lepidium Virginicum (Mutation L91P) with Chlorophyll-A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Water-Soluble Chlorophyll Protein (Wscp) From Lepidium Virginicum (Mutation L91P) with Chlorophyll-A within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:28.2 occ:1.00 MG A:CLA1001 0.0 28.2 1.0 O A:PRO36 1.9 25.9 1.0 ND A:CLA1001 2.0 28.1 1.0 NA A:CLA1001 2.0 29.1 1.0 NB A:CLA1001 2.0 27.3 1.0 NC A:CLA1001 2.1 26.5 1.0 C4D A:CLA1001 3.0 28.5 1.0 C4A A:CLA1001 3.0 28.5 1.0 C4B A:CLA1001 3.0 27.0 1.0 C1B A:CLA1001 3.1 27.8 1.0 C1A A:CLA1001 3.1 28.9 1.0 C1C A:CLA1001 3.1 26.8 1.0 C4C A:CLA1001 3.1 26.6 1.0 C1D A:CLA1001 3.1 27.3 1.0 C A:PRO36 3.1 25.6 1.0 CHB A:CLA1001 3.4 28.0 1.0 CHC A:CLA1001 3.4 27.6 1.0 CHA A:CLA1001 3.5 29.1 1.0 CHD A:CLA1001 3.5 26.3 1.0 N A:ALA37 4.1 27.0 1.0 C3D A:CLA1001 4.1 28.9 1.0 CA A:PRO36 4.2 24.8 1.0 CA A:ALA37 4.2 28.2 1.0 C3B A:CLA1001 4.2 27.0 1.0 C2D A:CLA1001 4.3 27.6 1.0 C2B A:CLA1001 4.3 27.7 1.0 C2C A:CLA1001 4.3 27.0 1.0 C3C A:CLA1001 4.3 27.2 1.0 C3A A:CLA1001 4.3 27.9 1.0 C2A A:CLA1001 4.4 28.8 1.0 CB A:PRO36 4.5 24.1 1.0 N A:PRO36 4.5 24.8 1.0 CED B:CLA1001 4.5 25.8 1.0 CB A:ALA37 4.6 28.3 1.0 C14 B:CLA1001 4.8 73.1 1.0 C4 B:CLA1001 4.8 46.7 1.0 CG2 A:VAL35 4.9 24.7 1.0 CD A:PRO36 4.9 24.0 1.0 CB A:VAL35 4.9 25.0 1.0 CBD A:CLA1001 5.0 30.1 1.0

Magnesium binding site 2 out of 4 in the Water-Soluble Chlorophyll Protein (Wscp) From Lepidium Virginicum (Mutation L91P) with Chlorophyll-A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Water-Soluble Chlorophyll Protein (Wscp) From Lepidium Virginicum (Mutation L91P) with Chlorophyll-A within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1001 b:29.3 occ:1.00 MG B:CLA1001 0.0 29.3 1.0 O B:PRO36 1.9 28.9 1.0 ND B:CLA1001 2.0 27.6 1.0 NA B:CLA1001 2.0 27.8 1.0 NB B:CLA1001 2.0 27.5 1.0 NC B:CLA1001 2.1 28.3 1.0 C4D B:CLA1001 2.9 28.4 1.0 C4A B:CLA1001 3.0 26.9 1.0 C1A B:CLA1001 3.0 27.0 1.0 C4B B:CLA1001 3.0 27.7 1.0 C1C B:CLA1001 3.1 28.3 1.0 C1B B:CLA1001 3.1 27.8 1.0 C4C B:CLA1001 3.1 28.9 1.0 C1D B:CLA1001 3.1 27.7 1.0 C B:PRO36 3.2 29.0 1.0 CHC B:CLA1001 3.4 28.0 1.0 CHB B:CLA1001 3.4 26.6 1.0 CHA B:CLA1001 3.4 28.1 1.0 CHD B:CLA1001 3.5 28.5 1.0 N B:ALA37 4.1 28.5 1.0 C3D B:CLA1001 4.1 27.9 1.0 CA B:PRO36 4.2 28.3 1.0 C3B B:CLA1001 4.3 28.6 1.0 C2C B:CLA1001 4.3 29.1 1.0 C2D B:CLA1001 4.3 27.1 1.0 C3C B:CLA1001 4.3 28.8 1.0 C2B B:CLA1001 4.3 29.2 1.0 CA B:ALA37 4.3 28.3 1.0 C20 B:CLA1001 4.3 73.3 1.0 C3A B:CLA1001 4.4 26.1 1.0 C2A B:CLA1001 4.4 26.4 1.0 CB B:PRO36 4.4 28.4 1.0 N B:PRO36 4.5 28.4 1.0 CED A:CLA1001 4.6 33.0 1.0 CB B:ALA37 4.7 28.1 1.0 CD B:PRO36 4.9 28.1 1.0 CBD B:CLA1001 4.9 27.4 1.0 CG2 B:VAL35 4.9 31.0 1.0 CB B:VAL35 4.9 29.7 1.0

Magnesium binding site 3 out of 4 in the Water-Soluble Chlorophyll Protein (Wscp) From Lepidium Virginicum (Mutation L91P) with Chlorophyll-A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Water-Soluble Chlorophyll Protein (Wscp) From Lepidium Virginicum (Mutation L91P) with Chlorophyll-A within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1001 b:23.7 occ:1.00 MG C:CLA1001 0.0 23.7 1.0 O C:PRO36 1.9 25.2 1.0 ND C:CLA1001 2.0 23.7 1.0 NA C:CLA1001 2.0 23.9 1.0 NB C:CLA1001 2.0 23.9 1.0 NC C:CLA1001 2.1 23.4 1.0 C4D C:CLA1001 2.9 24.2 1.0 C1A C:CLA1001 3.0 23.9 1.0 C4B C:CLA1001 3.0 24.0 1.0 C4A C:CLA1001 3.0 23.2 1.0 C1C C:CLA1001 3.1 23.5 1.0 C1B C:CLA1001 3.1 24.0 1.0 C4C C:CLA1001 3.1 22.5 1.0 C1D C:CLA1001 3.1 23.5 1.0 C C:PRO36 3.2 25.2 1.0 CHC C:CLA1001 3.4 23.7 1.0 CHA C:CLA1001 3.4 24.0 1.0 CHB C:CLA1001 3.4 22.9 1.0 CHD C:CLA1001 3.5 22.7 1.0 C19 C:CLA1001 4.0 73.1 1.0 N C:ALA37 4.1 23.8 1.0 C3D C:CLA1001 4.1 24.0 1.0 CA C:ALA37 4.2 25.4 1.0 CA C:PRO36 4.2 24.8 1.0 C3B C:CLA1001 4.2 24.3 1.0 C2C C:CLA1001 4.3 23.2 1.0 C2D C:CLA1001 4.3 24.2 1.0 C2B C:CLA1001 4.3 24.1 1.0 C3C C:CLA1001 4.3 22.4 1.0 C3A C:CLA1001 4.4 23.2 1.0 C2A C:CLA1001 4.4 23.5 1.0 C20 C:CLA1001 4.4 70.4 1.0 CB C:PRO36 4.5 24.6 1.0 CB C:ALA37 4.5 24.8 1.0 N C:PRO36 4.6 25.6 1.0 C18 C:CLA1001 4.8 72.1 1.0 CED D:CLA1001 4.8 18.4 1.0 CBD C:CLA1001 4.9 24.8 1.0 CG2 C:VAL35 5.0 28.0 1.0 CD C:PRO36 5.0 25.0 1.0

Magnesium binding site 4 out of 4 in the Water-Soluble Chlorophyll Protein (Wscp) From Lepidium Virginicum (Mutation L91P) with Chlorophyll-A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Water-Soluble Chlorophyll Protein (Wscp) From Lepidium Virginicum (Mutation L91P) with Chlorophyll-A within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1001 b:18.6 occ:1.00 MG D:CLA1001 0.0 18.6 1.0 O D:PRO36 1.9 22.3 1.0 ND D:CLA1001 2.0 18.4 1.0 NA D:CLA1001 2.0 18.5 1.0 NB D:CLA1001 2.0 18.2 1.0 NC D:CLA1001 2.1 18.3 1.0 C4D D:CLA1001 3.0 18.5 1.0 C4B D:CLA1001 3.0 18.2 1.0 C1A D:CLA1001 3.0 18.8 1.0 C4A D:CLA1001 3.0 18.4 1.0 C1C D:CLA1001 3.1 18.0 1.0 C1B D:CLA1001 3.1 18.4 1.0 C1D D:CLA1001 3.1 18.2 1.0 C4C D:CLA1001 3.1 18.0 1.0 C D:PRO36 3.2 22.5 1.0 CHC D:CLA1001 3.4 18.0 1.0 CHB D:CLA1001 3.4 18.2 1.0 CHA D:CLA1001 3.4 18.9 1.0 CHD D:CLA1001 3.5 17.8 1.0 N D:ALA37 4.1 21.9 1.0 C3D D:CLA1001 4.1 18.4 1.0 CA D:PRO36 4.2 22.4 1.0 C3B D:CLA1001 4.2 18.1 1.0 CA D:ALA37 4.3 22.7 1.0 C2D D:CLA1001 4.3 18.1 1.0 C2C D:CLA1001 4.3 18.2 1.0 C2B D:CLA1001 4.3 18.1 1.0 C3C D:CLA1001 4.3 18.1 1.0 C3A D:CLA1001 4.4 18.4 1.0 C2A D:CLA1001 4.4 19.1 1.0 CB D:PRO36 4.4 22.5 1.0 N D:PRO36 4.5 23.2 1.0 CB D:ALA37 4.6 22.5 1.0 CED C:CLA1001 4.6 25.1 1.0 C4 C:CLA1001 4.7 33.1 1.0 CD D:PRO36 4.9 23.0 1.0 CG2 D:VAL35 4.9 21.1 1.0 CBD D:CLA1001 4.9 18.9 1.0 C14 C:CLA1001 5.0 65.9 1.0 CB D:VAL35 5.0 21.6 1.0

D.M.Palm, A.Agostini, V.Averesch, P.Girr, M.Werwie, S.Takahashi, H.Satoh, E.Jaenicke, H.Paulsen. Chlorophyll A/B Binding-Specificity in Water-Soluble Chlorophyll Protein. Nat Plants V. 4 920 2018.
ISSN: ESSN 2055-0278
PubMed: 30297830
DOI: 10.1038/S41477-018-0273-Z