Magnesium in PDB 6gml: Structure of Paused Transcription Complex Pol II-Dsif-Nelf

All present enzymatic activity of Structure of Paused Transcription Complex Pol II-Dsif-Nelf:
2.7.7.6;

The structure of Structure of Paused Transcription Complex Pol II-Dsif-Nelf also contains other interesting chemical elements:

Zinc

(Zn)

9 atoms

The binding sites of Magnesium atom in the Structure of Paused Transcription Complex Pol II-Dsif-Nelf (pdb code 6gml). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Paused Transcription Complex Pol II-Dsif-Nelf, PDB code: 6gml:

Magnesium binding site 1 out of 1 in the Structure of Paused Transcription Complex Pol II-Dsif-Nelf


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Paused Transcription Complex Pol II-Dsif-Nelf within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2001 b:26.4 occ:1.00 OD1 A:ASP495 2.1 17.9 1.0 OD1 A:ASP499 2.1 17.1 1.0 OD1 A:ASP497 2.2 17.1 1.0 OD2 A:ASP499 2.5 17.1 1.0 CG A:ASP499 2.6 17.1 1.0 CG A:ASP495 3.2 17.9 1.0 CG A:ASP497 3.3 17.1 1.0 C5' P:U46 3.6 36.9 1.0 OD2 A:ASP495 3.7 17.9 1.0 O3' P:U46 3.7 36.9 1.0 OD2 A:ASP497 3.8 17.1 1.0 CB A:ASP499 4.0 17.1 1.0 C4' P:U46 4.1 36.9 1.0 N A:ASP495 4.3 17.9 1.0 N A:ASP497 4.3 17.1 1.0 OP1 P:U46 4.3 36.9 1.0 N A:ASP499 4.4 17.1 1.0 C3' P:U46 4.5 36.9 1.0 CB A:ASP495 4.5 17.9 1.0 C A:ASP495 4.5 17.9 1.0 CA A:ASP499 4.5 17.1 1.0 NH2 A:ARG460 4.6 16.9 1.0 CB A:ASP497 4.6 17.1 1.0 CA A:ASP495 4.6 17.9 1.0 O5' P:U46 4.6 36.9 1.0 O A:ASP495 4.7 17.9 1.0 N A:PHE496 4.7 17.0 1.0 O A:ASP497 4.7 17.1 1.0 C A:ASP497 4.7 17.1 1.0 CA A:ASP497 4.8 17.1 1.0

S.M.Vos, L.Farnung, H.Urlaub, P.Cramer. Structure of Paused Transcription Complex Pol II-Dsif-Nelf. Nature V. 560 601 2018.
ISSN: ESSN 1476-4687
PubMed: 30135580
DOI: 10.1038/S41586-018-0442-2