Magnesium in PDB 6gni: Cryo-Tomography and Subtomogram Averaging of SAR1-SEC23-SEC24 - Fitted Model.

The structure of Cryo-Tomography and Subtomogram Averaging of SAR1-SEC23-SEC24 - Fitted Model. also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Cryo-Tomography and Subtomogram Averaging of SAR1-SEC23-SEC24 - Fitted Model. (pdb code 6gni). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Tomography and Subtomogram Averaging of SAR1-SEC23-SEC24 - Fitted Model., PDB code: 6gni:

Magnesium binding site 1 out of 1 in the Cryo-Tomography and Subtomogram Averaging of SAR1-SEC23-SEC24 - Fitted Model.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Tomography and Subtomogram Averaging of SAR1-SEC23-SEC24 - Fitted Model. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg202 b:28.9 occ:1.00 O1B B:GNP201 1.9 28.4 1.0 O1G B:GNP201 2.0 33.1 1.0 OG1 B:THR54 2.2 17.8 1.0 OG1 B:THR37 2.3 22.4 1.0 PG B:GNP201 2.9 30.2 1.0 PB B:GNP201 2.9 28.5 1.0 N3B B:GNP201 3.0 27.4 1.0 CB B:THR54 3.4 20.9 1.0 CB B:THR37 3.4 26.2 1.0 N B:THR54 3.6 23.1 1.0 O3G B:GNP201 3.7 27.8 1.0 O2B B:GNP201 4.0 27.3 1.0 O3A B:GNP201 4.0 26.2 1.0 O2A B:GNP201 4.1 26.1 1.0 CA B:THR54 4.1 19.9 1.0 O2G B:GNP201 4.1 30.6 1.0 N B:THR37 4.1 27.5 1.0 CA B:THR37 4.4 27.2 1.0 OD2 B:ASP73 4.4 44.8 1.0 NH1 A:ARG722 4.4 26.6 1.0 PA B:GNP201 4.4 25.8 1.0 OD1 B:ASP73 4.4 48.0 1.0 CG2 B:THR37 4.5 23.1 1.0 O B:LEU74 4.6 30.5 1.0 CG2 B:THR54 4.6 20.4 1.0 O1A B:GNP201 4.6 25.2 1.0 O B:GLN52 4.6 30.7 1.0 C B:PRO53 4.6 24.6 1.0 CE B:LYS36 4.7 27.8 1.0 CA B:PRO53 4.7 26.7 1.0 OD1 A:ASN600 4.8 28.8 1.0 CG B:ASP73 4.8 44.7 1.0 NZ B:LYS36 4.9 22.4 1.0 CB B:LYS36 4.9 28.1 1.0

J.Hutchings, V.Stancheva, E.A.Miller, G.Zanetti. Subtomogram Averaging of Copii Assemblies Reveals How Coat Organization Dictates Membrane Shape. Nat Commun V. 9 4154 2018.
ISSN: ESSN 2041-1723
PubMed: 30297805
DOI: 10.1038/S41467-018-06577-4