Magnesium in PDB 6goe: Kras Full Length G12V Gppnhp

The structure of Kras Full Length G12V Gppnhp, PDB code: 6goe was solved by A.Cruz-Migoni, C.E.Quevedo, S.B.Carr, M.T.Ehebauer, S.V.E.Phillips, T.H.Rabbitts, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.94 / 1.60
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	79.880, 79.880, 78.790, 90.00, 90.00, 120.00
R / Rfree (%)	18.2 / 22

The binding sites of Magnesium atom in the Kras Full Length G12V Gppnhp (pdb code 6goe). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Kras Full Length G12V Gppnhp, PDB code: 6goe:

Magnesium binding site 1 out of 1 in the Kras Full Length G12V Gppnhp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Kras Full Length G12V Gppnhp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg200 b:22.6 occ:1.00 O A:HOH321 2.0 22.8 1.0 O1B A:GNP201 2.0 17.5 1.0 O3G A:GNP201 2.0 23.6 1.0 OG1 A:THR35 2.2 23.0 1.0 OG A:SER17 2.2 18.7 1.0 O A:HOH324 2.3 21.4 1.0 CB A:THR35 3.1 28.8 1.0 CB A:SER17 3.2 19.9 1.0 PG A:GNP201 3.2 25.4 1.0 PB A:GNP201 3.3 20.6 1.0 N3B A:GNP201 3.5 22.8 1.0 N A:SER17 3.9 18.4 1.0 N A:THR35 4.0 28.2 1.0 CA A:SER17 4.1 18.0 1.0 O2G A:GNP201 4.1 23.6 1.0 CG2 A:THR35 4.1 28.8 1.0 CA A:THR35 4.2 28.4 1.0 OD2 A:ASP57 4.2 25.1 1.0 OD1 A:ASP57 4.2 26.7 1.0 O2B A:GNP201 4.3 19.3 1.0 O1A A:GNP201 4.3 25.5 1.0 O3A A:GNP201 4.3 18.9 1.0 O1G A:GNP201 4.4 24.2 1.0 O A:HOH336 4.4 34.1 1.0 O A:THR58 4.5 21.0 1.0 O A:ASP33 4.6 27.3 1.0 CG A:ASP57 4.6 26.1 1.0 O2A A:GNP201 4.7 20.8 1.0 PA A:GNP201 4.7 21.3 1.0 CB A:LYS16 4.8 19.7 1.0 CE A:LYS16 4.9 18.5 1.0 C A:PRO34 4.9 33.5 1.0 NZ A:LYS16 4.9 18.9 1.0 C A:LYS16 5.0 18.2 1.0

A.Cruz-Migoni, P.Canning, C.E.Quevedo, C.J.R.Bataille, N.Bery, A.Miller, A.J.Russell, S.E.V.Phillips, S.B.Carr, T.H.Rabbitts. Structure-Based Development of New Ras-Effector Inhibitors From A Combination of Active and Inactive Ras-Binding Compounds. Proc. Natl. Acad. Sci. V. 116 2545 2019U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30683716
DOI: 10.1073/PNAS.1811360116