Magnesium in PDB 6gyl: Structure of A Yeast Closed Complex with Distorted Dna (Core Ccdist)

All present enzymatic activity of Structure of A Yeast Closed Complex with Distorted Dna (Core Ccdist):
2.7.7.6; 3.6.4.12;

The structure of Structure of A Yeast Closed Complex with Distorted Dna (Core Ccdist) also contains other interesting chemical elements:

Zinc

(Zn)

10 atoms

The binding sites of Magnesium atom in the Structure of A Yeast Closed Complex with Distorted Dna (Core Ccdist) (pdb code 6gyl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of A Yeast Closed Complex with Distorted Dna (Core Ccdist), PDB code: 6gyl:

Magnesium binding site 1 out of 1 in the Structure of A Yeast Closed Complex with Distorted Dna (Core Ccdist)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Yeast Closed Complex with Distorted Dna (Core Ccdist) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1803 b:0.0 occ:1.00 OD1 A:ASP485 2.3 0.0 1.0 OD2 A:ASP485 2.4 0.0 1.0 CG A:ASP485 2.7 0.0 1.0 OD1 A:ASP481 2.8 0.0 1.0 OD2 A:ASP483 3.3 0.0 1.0 CG A:ASP481 3.6 0.0 1.0 OD2 A:ASP481 3.6 0.0 1.0 OD1 A:ASP483 3.7 0.0 1.0 CG A:ASP483 3.8 0.0 1.0 NH2 A:ARG446 4.1 0.0 1.0 CB A:ASP485 4.1 0.0 1.0 O A:ASP481 4.4 0.0 1.0 O A:ASP483 4.5 0.0 1.0 CA A:ASP485 4.8 0.0 1.0 N A:ASP481 4.9 0.0 1.0 CB A:ASP481 5.0 0.0 1.0 N A:ASP485 5.0 0.0 1.0

C.Dienemann, B.Schwalb, S.Schilbach, P.Cramer. Promoter Distortion and Opening in the Rna Polymerase II Cleft. Mol. Cell V. 73 97 2019.
ISSN: ISSN 1097-4164
PubMed: 30472190
DOI: 10.1016/J.MOLCEL.2018.10.014