Magnesium in PDB 6gym: Structure of A Yeast Closed Complex with Distorted Dna (Ccdist)

All present enzymatic activity of Structure of A Yeast Closed Complex with Distorted Dna (Ccdist):
2.7.7.6; 3.6.4.12;

The structure of Structure of A Yeast Closed Complex with Distorted Dna (Ccdist) also contains other interesting chemical elements:

Zinc	(Zn)	16 atoms
Iron	(Fe)	4 atoms

The binding sites of Magnesium atom in the Structure of A Yeast Closed Complex with Distorted Dna (Ccdist) (pdb code 6gym). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of A Yeast Closed Complex with Distorted Dna (Ccdist), PDB code: 6gym:

Magnesium binding site 1 out of 1 in the Structure of A Yeast Closed Complex with Distorted Dna (Ccdist)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Yeast Closed Complex with Distorted Dna (Ccdist) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1803 b:0.0 occ:1.00 OD2 A:ASP481 1.9 0.0 1.0 OD2 A:ASP483 2.0 0.0 1.0 OD1 A:ASP483 2.2 0.0 1.0 CG A:ASP483 2.3 0.0 1.0 CG A:ASP481 2.7 0.0 1.0 OD1 A:ASP485 2.9 0.0 1.0 OD1 A:ASP481 3.0 0.0 1.0 CG A:ASP485 3.8 0.0 1.0 CB A:ASP483 3.8 0.0 1.0 OD2 A:ASP485 3.9 0.0 1.0 CB A:ASP481 4.0 0.0 1.0 O A:ASP481 4.4 0.0 1.0 N A:ASP483 4.7 0.0 1.0 CA A:ASP483 4.7 0.0 1.0 C A:ASP481 4.7 0.0 1.0 CA A:ASP481 4.8 0.0 1.0 C A:ASP483 4.8 0.0 1.0

C.Dienemann, B.Schwalb, S.Schilbach, P.Cramer. Promoter Distortion and Opening in the Rna Polymerase II Cleft. Mol. Cell V. 73 97 2019.
ISSN: ISSN 1097-4164
PubMed: 30472190
DOI: 10.1016/J.MOLCEL.2018.10.014