Magnesium in PDB 6h21: Tarp-Udp-Glcnac-Mn

The structure of Tarp-Udp-Glcnac-Mn, PDB code: 6h21 was solved by Y.Guo, T.Stehle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.68 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	43.860, 95.360, 130.550, 90.00, 93.51, 90.00
R / Rfree (%)	17.6 / 21.1

The structure of Tarp-Udp-Glcnac-Mn also contains other interesting chemical elements:

Manganese	(Mn)	7 atoms
Chlorine	(Cl)	10 atoms

The binding sites of Magnesium atom in the Tarp-Udp-Glcnac-Mn (pdb code 6h21). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Tarp-Udp-Glcnac-Mn, PDB code: 6h21:

Magnesium binding site 1 out of 1 in the Tarp-Udp-Glcnac-Mn


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Tarp-Udp-Glcnac-Mn within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg412 b:40.8 occ:1.00 O B:GLN27 2.3 29.8 1.0 O B:HOH593 2.3 43.7 1.0 O B:HOH620 2.4 27.6 1.0 O B:MET29 2.4 26.1 1.0 O B:HOH691 2.4 33.8 1.0 O B:HOH571 2.5 37.4 1.0 C B:MET29 3.4 26.8 1.0 C B:GLN27 3.5 28.0 1.0 N B:SER31 3.7 29.1 1.0 C B:THR28 4.0 27.6 1.0 O B:THR28 4.0 28.6 1.0 CA B:LYS30 4.0 30.7 1.0 N B:LYS30 4.1 28.9 1.0 C B:LYS30 4.1 29.3 1.0 N B:MET29 4.3 26.1 1.0 N B:GLN27 4.3 27.4 1.0 O B:HOH801 4.4 53.5 1.0 N B:THR28 4.4 27.4 1.0 CA B:SER31 4.4 28.6 0.3 CA B:SER31 4.4 29.3 0.7 CA B:THR28 4.4 27.9 1.0 CA B:GLN27 4.4 26.7 1.0 CA B:MET29 4.5 26.0 1.0 CB B:SER31 4.5 28.7 0.3 CB B:SER31 4.6 30.7 0.7 OH B:TYR34 4.8 23.9 1.0 CB B:GLN27 4.9 25.2 1.0 CE1 B:TYR34 5.0 23.9 1.0

D.Gerlach, Y.Guo, C.De Castro, S.H.Kim, K.Schlatterer, F.F.Xu, C.Pereira, P.H.Seeberger, S.Ali, J.Codee, W.Sirisarn, B.Schulte, C.Wolz, J.Larsen, A.Molinaro, B.L.Lee, G.Xia, T.Stehle, A.Peschel. Methicillin-Resistant Staphylococcus Aureus Alters Cell Wall Glycosylation to Evade Immunity. Nature V. 563 705 2018.
ISSN: ESSN 1476-4687
PubMed: 30464342
DOI: 10.1038/S41586-018-0730-X