Atomistry » Magnesium » PDB 6gtr-6h4m » 6h4c
Atomistry »
  Magnesium »
    PDB 6gtr-6h4m »
      6h4c »

Magnesium in PDB 6h4c: A Polyamorous Repressor: Deciphering the Evolutionary Strategy Used By the Phage-Inducible Chromosomal Islands to Spread in Nature.

Protein crystallography data

The structure of A Polyamorous Repressor: Deciphering the Evolutionary Strategy Used By the Phage-Inducible Chromosomal Islands to Spread in Nature., PDB code: 6h4c was solved by J.R.Ciges-Tomas, C.Alite, J.Z.Bowring, J.Donderis, J.R.Penades, A.Marina, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 95.93 / 2.52
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 144.490, 144.490, 149.420, 90.00, 90.00, 120.00
R / Rfree (%) 19.7 / 24.2

Other elements in 6h4c:

The structure of A Polyamorous Repressor: Deciphering the Evolutionary Strategy Used By the Phage-Inducible Chromosomal Islands to Spread in Nature. also contains other interesting chemical elements:

Nickel (Ni) 5 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the A Polyamorous Repressor: Deciphering the Evolutionary Strategy Used By the Phage-Inducible Chromosomal Islands to Spread in Nature. (pdb code 6h4c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the A Polyamorous Repressor: Deciphering the Evolutionary Strategy Used By the Phage-Inducible Chromosomal Islands to Spread in Nature., PDB code: 6h4c:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6h4c

Go back to Magnesium Binding Sites List in 6h4c
Magnesium binding site 1 out of 2 in the A Polyamorous Repressor: Deciphering the Evolutionary Strategy Used By the Phage-Inducible Chromosomal Islands to Spread in Nature.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of A Polyamorous Repressor: Deciphering the Evolutionary Strategy Used By the Phage-Inducible Chromosomal Islands to Spread in Nature. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg201

b:43.6
occ:1.00
O E:HOH313 2.2 40.8 1.0
OD2 E:ASP95 2.3 46.1 1.0
O E:HOH316 2.4 39.8 1.0
O A:HOH320 2.4 41.5 1.0
OD1 A:ASP95 2.5 43.1 1.0
OD2 A:ASP95 2.5 45.9 1.0
OD2 C:ASP95 2.6 44.8 1.0
OD1 C:ASP95 2.7 38.9 1.0
OD1 E:ASP95 2.7 39.3 1.0
CG E:ASP95 2.8 41.4 1.0
CG A:ASP95 2.9 42.5 1.0
CG C:ASP95 3.0 44.6 1.0
NZ A:LYS93 4.0 42.9 1.0
O E:HOH308 4.2 44.7 1.0
O A:HOH311 4.4 38.4 1.0
CB E:ASP95 4.4 33.2 1.0
CB A:ASP95 4.4 39.2 1.0
NZ C:LYS93 4.4 47.0 1.0
NZ E:LYS93 4.4 38.8 1.0
O E:ASP95 4.5 39.3 1.0
O A:ASP95 4.5 40.6 1.0
NE2 A:GLN40 4.5 41.1 1.0
CB C:ASP95 4.5 39.8 1.0
O C:HOH326 4.6 48.1 1.0
O C:ASP95 4.7 39.0 1.0
NE2 E:GLN40 4.9 38.1 1.0
O A:HOH343 5.0 50.7 1.0

Magnesium binding site 2 out of 2 in 6h4c

Go back to Magnesium Binding Sites List in 6h4c
Magnesium binding site 2 out of 2 in the A Polyamorous Repressor: Deciphering the Evolutionary Strategy Used By the Phage-Inducible Chromosomal Islands to Spread in Nature.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of A Polyamorous Repressor: Deciphering the Evolutionary Strategy Used By the Phage-Inducible Chromosomal Islands to Spread in Nature. within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg201

b:31.5
occ:0.33
O G:HOH313 2.6 43.8 1.0
OD2 G:ASP95 2.7 40.4 1.0
OD1 G:ASP95 2.9 39.7 1.0
CG G:ASP95 3.2 37.6 1.0
NZ G:LYS93 4.3 39.4 1.0
CB G:ASP95 4.7 34.9 1.0
NE2 G:GLN40 4.7 42.3 1.0
O G:ASP95 4.8 38.4 1.0

Reference:

J.Rafael Ciges-Tomas, C.Alite, S.Humphrey, J.Donderis, J.Bowring, X.Salvatella, J.R.Penades, A.Marina. The Structure of A Polygamous Repressor Reveals How Phage-Inducible Chromosomal Islands Spread in Nature. Nat Commun V. 10 3676 2019.
ISSN: ESSN 2041-1723
PubMed: 31417084
DOI: 10.1038/S41467-019-11504-2
Page generated: Tue Oct 1 01:30:09 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy