Magnesium in PDB 6h57: Crystal Structure of S. Cerevisiae Deah-Box Rna Helicase DHR1, Essential For Small Ribosomal Subunit Biogenesis

Enzymatic activity of Crystal Structure of S. Cerevisiae Deah-Box Rna Helicase DHR1, Essential For Small Ribosomal Subunit Biogenesis

All present enzymatic activity of Crystal Structure of S. Cerevisiae Deah-Box Rna Helicase DHR1, Essential For Small Ribosomal Subunit Biogenesis:
3.6.4.13;

Protein crystallography data

The structure of Crystal Structure of S. Cerevisiae Deah-Box Rna Helicase DHR1, Essential For Small Ribosomal Subunit Biogenesis, PDB code: 6h57 was solved by A.Roychowdhury, M.Graille, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.83 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.314, 115.800, 157.479, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 24.5

Other elements in 6h57:

The structure of Crystal Structure of S. Cerevisiae Deah-Box Rna Helicase DHR1, Essential For Small Ribosomal Subunit Biogenesis also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of S. Cerevisiae Deah-Box Rna Helicase DHR1, Essential For Small Ribosomal Subunit Biogenesis (pdb code 6h57). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of S. Cerevisiae Deah-Box Rna Helicase DHR1, Essential For Small Ribosomal Subunit Biogenesis, PDB code: 6h57:

Magnesium binding site 1 out of 1 in 6h57

Go back to Magnesium Binding Sites List in 6h57
Magnesium binding site 1 out of 1 in the Crystal Structure of S. Cerevisiae Deah-Box Rna Helicase DHR1, Essential For Small Ribosomal Subunit Biogenesis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of S. Cerevisiae Deah-Box Rna Helicase DHR1, Essential For Small Ribosomal Subunit Biogenesis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1315

b:49.7
occ:1.00
O A:HOH1634 2.1 42.1 1.0
O A:HOH1520 2.2 34.6 1.0
OE1 A:GLN884 2.2 29.3 1.0
OE1 A:GLN881 2.3 43.4 1.0
O A:HOH1439 2.4 41.0 1.0
O A:HOH1628 2.6 44.9 1.0
CD A:GLN884 3.2 33.6 1.0
CD A:GLN881 3.3 40.8 1.0
NE2 A:GLN884 3.5 22.8 1.0
NE2 A:GLN881 3.7 34.9 1.0
OE2 A:GLU893 3.9 35.9 1.0
O A:HOH1562 4.1 45.6 1.0
CG A:GLN884 4.6 30.3 1.0
CG A:GLN881 4.6 24.0 1.0
O A:HOH1445 4.6 28.4 1.0
CA A:GLN881 4.9 22.9 1.0
CB A:GLN881 4.9 23.7 1.0
CD A:GLU893 4.9 43.6 1.0
CB A:GLN884 5.0 29.2 1.0

Reference:

A.Roychowdhury, C.Joret, G.Bourgeois, V.Heurgue-Hamard, D.L.J.Lafontaine, M.Graille. The Deah-Box Rna Helicase DHR1 Contains A Remarkable Carboxyl Terminal Domain Essential For Small Ribosomal Subunit Biogenesis. Nucleic Acids Res. V. 47 7548 2019.
ISSN: ESSN 1362-4962
PubMed: 31188444
DOI: 10.1093/NAR/GKZ529
Page generated: Mon Dec 14 22:47:30 2020

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