Magnesium in PDB 6h67: Yeast Rna Polymerase I Elongation Complex Stalled By Cyclobutane Pyrimidine Dimer (Cpd)

All present enzymatic activity of Yeast Rna Polymerase I Elongation Complex Stalled By Cyclobutane Pyrimidine Dimer (Cpd):
2.7.7.6;

The structure of Yeast Rna Polymerase I Elongation Complex Stalled By Cyclobutane Pyrimidine Dimer (Cpd) also contains other interesting chemical elements:

Zinc

(Zn)

6 atoms

The binding sites of Magnesium atom in the Yeast Rna Polymerase I Elongation Complex Stalled By Cyclobutane Pyrimidine Dimer (Cpd) (pdb code 6h67). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Yeast Rna Polymerase I Elongation Complex Stalled By Cyclobutane Pyrimidine Dimer (Cpd), PDB code: 6h67:

Magnesium binding site 1 out of 1 in the Yeast Rna Polymerase I Elongation Complex Stalled By Cyclobutane Pyrimidine Dimer (Cpd)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Yeast Rna Polymerase I Elongation Complex Stalled By Cyclobutane Pyrimidine Dimer (Cpd) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3003 b:30.2 occ:1.00 O3' R:A10 2.1 43.7 1.0 OD1 A:ASP627 2.1 22.4 1.0 OD2 A:ASP631 2.1 24.7 1.0 OD1 A:ASP631 2.1 24.7 1.0 CG A:ASP631 2.3 24.7 1.0 OD1 A:ASP629 2.9 25.3 1.0 CG A:ASP627 3.2 22.4 1.0 C3' R:A10 3.3 43.7 1.0 OD2 A:ASP627 3.7 22.4 1.0 O2' R:A10 3.7 43.7 1.0 CB A:ASP631 3.7 24.7 1.0 C4' R:A10 3.8 43.7 1.0 O A:ASP627 3.9 22.4 1.0 C2' R:A10 4.1 43.7 1.0 CG A:ASP629 4.1 25.3 1.0 C A:ASP627 4.2 22.4 1.0 N A:ASP627 4.3 22.4 1.0 C5' R:A10 4.3 43.7 1.0 CA A:ASP631 4.4 24.7 1.0 NH2 A:ARG591 4.4 17.3 1.0 CB A:ASP627 4.4 22.4 1.0 N A:ASP631 4.4 24.7 1.0 CA A:ASP627 4.5 22.4 1.0 N A:ASP629 4.5 25.3 1.0 C A:GLY630 4.7 25.3 1.0 C A:ASP629 4.7 25.3 1.0 O A:ASP629 4.7 25.3 1.0 OD2 A:ASP629 4.7 25.3 1.0 O A:GLY630 4.8 25.3 1.0 N A:PHE628 4.9 21.4 1.0

M.Sanz-Murillo, J.Xu, G.A.Belogurov, O.Calvo, D.Gil-Carton, M.Moreno-Morcillo, D.Wang, C.Fernandez-Tornero. Structural Basis of Rna Polymerase I Stalling at Uv Light-Induced Dna Damage. Proc. Natl. Acad. Sci. V. 115 8972 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30127008
DOI: 10.1073/PNAS.1802626115