Magnesium in PDB 6h8v: Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer in the P21 Spacegroup to 1.8 A.

Enzymatic activity of Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer in the P21 Spacegroup to 1.8 A.

All present enzymatic activity of Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer in the P21 Spacegroup to 1.8 A.:
5.4.2.6;

Protein crystallography data

The structure of Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer in the P21 Spacegroup to 1.8 A., PDB code: 6h8v was solved by A.J.Robertson, C.Bisson, J.P.Waltho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.29 / 1.84
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 53.100, 53.710, 81.090, 90.00, 90.38, 90.00
R / Rfree (%) 18.6 / 23.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer in the P21 Spacegroup to 1.8 A. (pdb code 6h8v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer in the P21 Spacegroup to 1.8 A., PDB code: 6h8v:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6h8v

Go back to Magnesium Binding Sites List in 6h8v
Magnesium binding site 1 out of 2 in the Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer in the P21 Spacegroup to 1.8 A.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer in the P21 Spacegroup to 1.8 A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:21.2
occ:1.00
OD2 A:ASP8 2.0 17.7 1.0
O A:HOH548 2.1 40.3 1.0
OD1 A:ASP170 2.1 18.0 1.0
O A:ASP10 2.3 18.1 0.5
O A:ASP10 2.3 18.1 0.5
OE1 A:GLU169 2.5 21.2 1.0
O A:HOH469 3.1 24.3 1.0
CG A:ASP8 3.2 15.1 1.0
CG A:ASP170 3.2 16.5 1.0
C A:ASP10 3.5 17.9 0.5
CD A:GLU169 3.5 18.9 1.0
C A:ASP10 3.5 17.8 0.5
O A:HOH427 3.5 35.0 1.0
CB A:ASP8 3.8 14.9 1.0
OE2 A:GLU169 3.8 17.2 1.0
OD2 A:ASP170 3.9 15.8 1.0
N A:ASP170 4.1 15.3 1.0
OD1 A:ASP8 4.2 16.1 1.0
CB A:ASP10 4.2 19.3 0.5
CA A:ASP10 4.3 18.3 0.5
CB A:ASP170 4.3 16.5 1.0
N A:GLY11 4.4 17.6 1.0
CA A:ASP10 4.5 18.3 0.5
O A:HOH577 4.5 36.5 1.0
CA A:GLY11 4.5 16.6 1.0
N A:ASP10 4.6 17.6 0.5
CG2 A:VAL12 4.6 16.8 1.0
N A:ASP10 4.6 17.6 0.5
CA A:ASP170 4.6 16.6 1.0
N A:SER171 4.7 19.0 1.0
CB A:ASP10 4.7 19.4 0.5
CG A:GLU169 4.8 17.5 1.0
OG A:SER171 4.8 19.8 1.0
CB A:SER171 4.8 20.6 1.0
C A:ASP170 4.9 17.5 1.0
O A:HOH592 4.9 42.4 1.0
C A:GLY11 4.9 17.1 1.0
CA A:GLU169 4.9 15.9 1.0

Magnesium binding site 2 out of 2 in 6h8v

Go back to Magnesium Binding Sites List in 6h8v
Magnesium binding site 2 out of 2 in the Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer in the P21 Spacegroup to 1.8 A.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Beta-Phosphoglucomutase From Lactococcus Lactis in An Open Conformer in the P21 Spacegroup to 1.8 A. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:21.3
occ:1.00
OD1 B:ASP170 2.1 19.4 1.0
OD2 B:ASP8 2.1 16.5 1.0
O B:HOH545 2.2 33.8 1.0
O B:ASP10 2.3 17.5 1.0
OE1 B:GLU169 2.6 18.5 1.0
O B:HOH468 3.1 22.4 1.0
CG B:ASP8 3.3 15.9 1.0
CG B:ASP170 3.3 20.0 1.0
CD B:GLU169 3.5 17.8 1.0
C B:ASP10 3.5 18.9 1.0
O B:HOH445 3.7 32.2 1.0
OE2 B:GLU169 3.7 17.7 1.0
CB B:ASP8 3.8 15.1 1.0
OD2 B:ASP170 4.0 19.4 1.0
N B:ASP170 4.1 17.2 1.0
CB B:ASP170 4.3 18.9 1.0
OD1 B:ASP8 4.3 15.9 1.0
CA B:ASP10 4.4 20.5 1.0
N B:GLY11 4.5 17.4 1.0
OD2 B:ASP10 4.5 36.4 1.0
N B:ASP10 4.6 19.9 1.0
CB B:ASP10 4.6 24.0 1.0
CA B:GLY11 4.6 18.2 1.0
OG B:SER171 4.6 21.5 1.0
CA B:ASP170 4.6 18.5 1.0
N B:SER171 4.7 18.1 1.0
CG2 B:VAL12 4.7 16.2 1.0
CB B:SER171 4.8 20.4 1.0
CG B:GLU169 4.9 17.4 1.0
C B:ASP170 4.9 19.5 1.0
CG B:ASP10 5.0 29.3 1.0
C B:GLY11 5.0 17.9 1.0

Reference:

A.J.Robertson, C.Bisson, J.P.Waltho. Transition State of Phospho-Enzyme Hydrolysis in Beta-Phosphoglucomutase. To Be Published.
Page generated: Mon Jan 25 08:44:10 2021

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