Magnesium in PDB 6hmz: Crystal Structure of A Single-Domain Cyclophilin From Brassica Napus Phloem Sap

All present enzymatic activity of Crystal Structure of A Single-Domain Cyclophilin From Brassica Napus Phloem Sap:
5.2.1.8;

The structure of Crystal Structure of A Single-Domain Cyclophilin From Brassica Napus Phloem Sap, PDB code: 6hmz was solved by S.Falke, P.Hanhart, M.Garbe, M.Thiess, C.Betzel, J.Kehr, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	70.12 / 1.98
Space group	I 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	86.580, 86.580, 119.520, 90.00, 90.00, 90.00
R / Rfree (%)	18.4 / 22.3

The binding sites of Magnesium atom in the Crystal Structure of A Single-Domain Cyclophilin From Brassica Napus Phloem Sap (pdb code 6hmz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Single-Domain Cyclophilin From Brassica Napus Phloem Sap, PDB code: 6hmz:

Magnesium binding site 1 out of 1 in the Crystal Structure of A Single-Domain Cyclophilin From Brassica Napus Phloem Sap


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Single-Domain Cyclophilin From Brassica Napus Phloem Sap within 5.0Å range: probe atom residue distance (Å) B Occ X:Mg201 b:33.7 occ:1.00 O X:LEU53 2.6 28.5 1.0 O X:ALA38 2.9 21.5 1.0 N X:LYS44 2.9 29.9 1.0 C X:GLY42 3.2 30.6 1.0 N X:GLU43 3.4 26.7 1.0 CB X:LYS44 3.4 31.8 1.0 CA X:GLY42 3.4 31.9 1.0 CG X:LYS44 3.5 33.8 1.0 CB X:LEU53 3.6 28.3 1.0 C X:ALA38 3.6 23.1 1.0 CA X:LYS44 3.6 30.5 1.0 O X:GLY42 3.6 31.4 1.0 C X:LEU53 3.7 28.1 1.0 N X:GLY42 3.9 29.1 1.0 C X:GLU43 3.9 29.7 1.0 N X:LEU39 4.2 23.9 1.0 CA X:GLU43 4.2 29.6 1.0 CB X:ALA38 4.2 25.9 1.0 CA X:LEU53 4.2 26.2 1.0 CA X:LEU39 4.2 23.8 1.0 N X:GLY45 4.2 30.9 1.0 C X:LYS44 4.3 29.8 1.0 CG2 X:ILE85 4.4 26.6 1.0 CA X:ALA38 4.4 24.3 1.0 CD2 X:LEU39 4.4 28.0 1.0 CG X:GLU43 4.5 29.3 1.0 O X:HOH308 4.6 34.9 1.0 CD X:LYS44 4.7 32.5 1.0 CG X:LEU53 4.8 28.0 1.0 N X:HIS54 4.9 27.1 1.0 CD1 X:LEU53 4.9 27.6 1.0 N X:LEU53 4.9 25.9 1.0 CB X:GLU43 5.0 27.5 1.0 O X:GLY45 5.0 27.4 1.0 OG1 X:THR41 5.0 31.1 1.0

P.Hanhart, S.Falke, M.Garbe, V.Rose, M.Thiess, C.Betzel, J.Kehr. Enzyme Activity and Structural Features of Three Single-Domain Phloem Cyclophilins From Brassica Napus. Sci Rep V. 9 9368 2019.
ISSN: ESSN 2045-2322
PubMed: 31249367
DOI: 10.1038/S41598-019-45856-Y