Magnesium in PDB 6hrc: Outward-Facing Pglk with Atpgammas Bound

The structure of Outward-Facing Pglk with Atpgammas Bound, PDB code: 6hrc was solved by C.Perez, K.P.Locher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 3.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	125.680, 145.980, 206.760, 90.00, 90.00, 90.00
R / Rfree (%)	23.2 / 28.4

The binding sites of Magnesium atom in the Outward-Facing Pglk with Atpgammas Bound (pdb code 6hrc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Outward-Facing Pglk with Atpgammas Bound, PDB code: 6hrc:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Outward-Facing Pglk with Atpgammas Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Outward-Facing Pglk with Atpgammas Bound within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:0.5 occ:1.00 O3B B:AGS601 2.3 0.4 1.0 OE1 B:GLN430 2.5 0.8 1.0 CB B:SER389 2.6 0.3 1.0 O1B B:AGS601 3.0 92.8 1.0 PB B:AGS601 3.3 75.1 1.0 PG B:AGS601 3.3 0.1 1.0 S1G B:AGS601 3.4 0.6 1.0 CD B:GLN430 3.4 0.8 1.0 OG B:SER389 3.5 0.6 1.0 CA B:SER389 3.8 0.2 1.0 NE2 B:GLN430 3.8 0.7 1.0 O2A B:AGS601 3.8 93.1 1.0 N B:SER389 3.8 0.1 1.0 O3G B:AGS601 3.9 0.1 1.0 OD1 B:ASP509 4.0 0.5 1.0 OD2 B:ASP509 4.1 0.5 1.0 O3A B:AGS601 4.2 0.9 1.0 PA B:AGS601 4.3 93.2 1.0 O2B B:AGS601 4.4 71.5 1.0 O1A B:AGS601 4.5 79.9 1.0 CG B:ASP509 4.5 0.8 1.0 N A:GLY487 4.6 90.0 1.0 O2G B:AGS601 4.7 0.6 1.0 CG B:GLN430 4.7 0.5 1.0

Magnesium binding site 2 out of 2 in the Outward-Facing Pglk with Atpgammas Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Outward-Facing Pglk with Atpgammas Bound within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:0.8 occ:1.00 OE1 C:GLN430 2.0 0.5 1.0 OG C:SER389 2.4 99.4 1.0 S1G C:AGS601 2.5 0.3 1.0 CD C:GLN430 2.7 0.9 1.0 O2B C:AGS601 2.8 77.1 1.0 NE2 C:GLN430 3.1 0.7 1.0 PG C:AGS601 3.4 0.4 1.0 O3B C:AGS601 3.4 0.1 1.0 OD1 C:ASP509 3.5 0.5 1.0 CB C:SER389 3.5 98.1 1.0 O3G C:AGS601 3.7 0.8 1.0 PB C:AGS601 3.7 77.8 1.0 CG C:GLN430 3.9 0.2 1.0 OD2 C:ASP509 4.3 1.0 1.0 CG C:ASP509 4.3 0.3 1.0 N C:SER389 4.4 99.8 1.0 CA C:SER389 4.5 96.7 1.0 O1B C:AGS601 4.6 86.7 1.0 N D:GLY487 4.7 86.8 1.0 O2A C:AGS601 4.7 93.6 1.0 NE2 C:GLN510 4.8 0.5 1.0 O2G C:AGS601 4.9 0.3 1.0 O3A C:AGS601 5.0 69.8 1.0

C.Perez, A.R.Mehdipour, G.Hummer, K.P.Locher. Structure of Outward-Facing Pglk and Molecular Dynamics of Lipid-Linked Oligosaccharide Recognition and Translocation. Structure V. 27 669 2019.
ISSN: ISSN 0969-2126
PubMed: 30799077
DOI: 10.1016/J.STR.2019.01.013