Magnesium in PDB 6hy3: Three-Dimensional Structure of Agac From Zobellia Galactanivorans

All present enzymatic activity of Three-Dimensional Structure of Agac From Zobellia Galactanivorans:
3.2.1.81;

The structure of Three-Dimensional Structure of Agac From Zobellia Galactanivorans, PDB code: 6hy3 was solved by A.Naretto, M.Fanuel, D.Ropartz, H.Rogniaux, R.Larocque, M.Czjzek, C.Tellier, G.Michel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.42 / 1.30
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	60.604, 101.498, 46.693, 90.00, 90.00, 90.00
R / Rfree (%)	14.9 / 16.9

The binding sites of Magnesium atom in the Three-Dimensional Structure of Agac From Zobellia Galactanivorans (pdb code 6hy3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Three-Dimensional Structure of Agac From Zobellia Galactanivorans, PDB code: 6hy3:

Magnesium binding site 1 out of 1 in the Three-Dimensional Structure of Agac From Zobellia Galactanivorans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Three-Dimensional Structure of Agac From Zobellia Galactanivorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:11.5 occ:1.00 O A:GLY128 2.2 13.1 1.0 O A:ASP318 2.3 9.0 1.0 O A:GLU95 2.3 9.7 1.0 O A:HOH520 2.4 17.4 1.0 OD1 A:ASP318 2.4 10.3 1.0 O A:HOH630 2.6 21.5 1.0 C A:ASP318 3.3 7.9 1.0 C A:GLY128 3.4 12.6 1.0 C A:GLU95 3.4 9.0 1.0 CG A:ASP318 3.4 8.6 1.0 CA A:ASP318 3.7 8.6 1.0 O A:HOH528 3.8 23.4 1.0 CA A:GLY128 4.0 12.7 1.0 CB A:ASP318 4.1 8.7 1.0 OD1 A:ASN97 4.1 22.7 1.0 CA A:GLU95 4.2 10.2 1.0 CB A:PHE96 4.3 10.4 1.0 OD2 A:ASP318 4.3 10.4 1.0 N A:PHE96 4.4 9.8 1.0 N A:TRP319 4.4 7.7 1.0 N A:LYS129 4.5 10.4 1.0 C A:PHE96 4.5 13.1 1.0 CA A:PHE96 4.6 10.5 1.0 O A:PHE96 4.6 14.5 1.0 CB A:TRP319 4.6 9.2 1.0 CB A:GLU95 4.7 10.4 1.0 CG A:ASN97 4.7 21.0 1.0 CA A:LYS129 4.7 11.1 1.0 NZ A:LYS129 4.8 23.7 1.0 CD A:LYS129 4.8 16.1 1.0 CA A:TRP319 4.8 7.9 1.0 CD1 A:TRP319 4.8 8.3 1.0 OE1 A:GLU95 4.9 13.5 1.0

A.Naretto, M.Fanuel, D.Ropartz, H.Rogniaux, R.Larocque, M.Czjzek, C.Tellier, G.Michel. The Agar-Specific Hydrolasezgagac From the Marine Bacteriumzobellia Galactanivoransdefines A New GH16 Protein Subfamily. J.Biol.Chem. V. 294 6923 2019.
ISSN: ESSN 1083-351X
PubMed: 30846563
DOI: 10.1074/JBC.RA118.006609