Magnesium in PDB 6i0y: Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel

All present enzymatic activity of Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel:
2.7.11.1;

The structure of Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 143;

Binding sites:

The binding sites of Magnesium atom in the Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel (pdb code 6i0y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 143 binding sites of Magnesium where determined in the Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel, PDB code: 6i0y:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 143 in the Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel within 5.0Å range: probe atom residue distance (Å) B Occ 4:Mg101 b:20.6 occ:1.00 O A:HOH3439 2.0 12.2 1.0 O A:HOH3469 2.1 18.2 1.0 O 4:HOH201 2.6 4.3 1.0 O A:HOH3503 2.8 11.8 1.0 OD2 4:ASP20 3.3 43.5 1.0 OD1 4:ASP20 3.8 52.0 1.0 CG 4:ASP20 3.8 52.5 1.0 N7 A:G2742 4.5 10.8 1.0 O2 A:C2755 4.6 26.2 1.0 O6 A:G2742 4.6 9.6 1.0 OP2 A:A2741 4.7 5.1 1.0

Magnesium binding site 2 out of 143 in the Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3002 b:25.7 occ:1.00 O A:HOH3540 2.1 13.8 1.0 O A:HOH3615 2.3 0.0 1.0 O A:HOH3607 2.8 0.0 1.0 O4 A:U18 3.6 14.3 1.0 O4 A:U521 4.1 17.3 1.0 N6 A:A19 4.2 13.0 1.0 C4 A:U18 4.6 11.6 1.0 O6 A:G520 4.8 22.6 1.0 N7 A:G17 4.9 18.1 1.0 N6 A:A522 4.9 17.1 1.0 C5 A:U18 5.0 11.6 1.0

Magnesium binding site 3 out of 143 in the Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3003 b:11.2 occ:1.00 O A:HOH3537 1.9 11.9 1.0 O A:HOH3470 2.0 9.4 1.0 O A:HOH3482 2.0 18.0 1.0 O A:HOH3580 2.0 8.4 1.0 O A:HOH3472 2.5 17.3 1.0 O4 A:U29 3.7 18.5 1.0 O6 A:G30 4.1 14.3 1.0 C5 A:U29 4.1 9.8 1.0 OP2 A:U29 4.1 4.1 1.0 C4 A:U29 4.1 10.6 1.0 OP2 A:A28 4.3 12.8 1.0 OP2 A:A447 4.6 10.4 1.0 O6 A:G474 4.6 9.9 1.0 N7 A:G30 4.8 13.6 1.0 N4 A:C31 4.9 12.4 1.0 O6 A:G473 4.9 14.4 1.0 O5' A:A28 4.9 15.5 1.0

Magnesium binding site 4 out of 143 in the Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3004 b:20.2 occ:1.00 O A:HOH3391 2.0 5.2 1.0 OP1 A:U120 2.3 9.8 1.0 O A:HOH3550 2.3 6.8 1.0 O A:HOH3349 2.4 8.9 1.0 O A:HOH3310 2.7 15.1 1.0 O A:HOH3236 2.8 10.9 1.0 P A:U120 3.3 19.7 1.0 O6 A:G123 3.7 14.2 1.0 OP2 A:U120 3.7 38.9 1.0 O6 A:G122 3.7 13.0 1.0 O3' A:A119 3.8 27.0 1.0 N7 A:G123 4.3 13.1 1.0 N7 A:G122 4.3 14.8 1.0 C6 A:G122 4.5 12.5 1.0 C6 A:G123 4.5 13.7 1.0 O6 A:G124 4.6 15.2 1.0 MG A:MG3005 4.6 16.6 1.0 O5' A:U120 4.7 11.0 1.0 O2' A:A119 4.7 16.8 1.0 C5 A:G122 4.7 11.6 1.0 C5 A:G123 4.8 12.6 1.0 N4 A:C128 4.8 7.1 1.0 C5' A:U120 5.0 15.6 1.0

Magnesium binding site 5 out of 143 in the Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3005 b:16.6 occ:1.00 O A:HOH3504 2.1 10.8 1.0 O A:HOH3563 2.2 12.2 1.0 O A:HOH3310 2.3 15.1 1.0 O A:HOH3467 2.7 5.6 1.0 OP1 A:U120 3.2 9.8 1.0 OP2 A:G123 3.5 8.8 1.0 O3' A:A119 3.8 27.0 1.0 C5' A:U120 3.8 15.6 1.0 O5' A:U120 4.0 11.0 1.0 P A:U120 4.0 19.7 1.0 OP2 A:G122 4.1 10.9 1.0 N7 A:G123 4.5 13.1 1.0 O6 A:G124 4.6 15.2 1.0 MG A:MG3004 4.6 20.2 1.0 O A:HOH3236 4.7 10.9 1.0 C3' A:A119 4.9 27.6 1.0 P A:G123 4.9 8.8 1.0 C8 A:G123 4.9 13.5 1.0 P A:G122 5.0 16.2 1.0

Magnesium binding site 6 out of 143 in the Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3006 b:32.5 occ:1.00 O A:HOH3561 2.8 15.7 1.0 O A:HOH3487 3.4 16.3 1.0 OP2 A:U427 3.6 37.1 1.0 OP2 A:C426 3.7 13.0 1.0 OP2 A:A219 3.8 14.1 1.0 N7 A:G220 3.9 22.1 1.0 O6 A:G220 4.1 21.3 1.0 P A:C426 4.3 41.2 1.0 OP1 A:C426 4.4 30.4 1.0 O5' A:C426 4.4 28.1 1.0 C5 A:G220 4.7 15.1 1.0 C5 A:U427 4.8 24.9 1.0 C6 A:G220 4.8 19.8 1.0 C8 A:G220 4.9 22.9 1.0

Magnesium binding site 7 out of 143 in the Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3007 b:19.9 occ:1.00 O A:HOH3392 2.0 10.2 1.0 O A:HOH3511 2.5 22.7 1.0 OP2 A:G297 3.0 28.9 1.0 O6 A:G298 3.4 19.0 1.0 OP1 A:G338 3.8 24.0 1.0 N7 A:G298 4.0 22.8 1.0 C6 A:G298 4.3 19.0 1.0 N7 A:G297 4.4 27.4 1.0 P A:G297 4.4 28.5 1.0 OP2 A:U296 4.4 15.0 1.0 C5 A:G298 4.5 21.8 1.0 C8 A:G297 4.6 27.2 1.0 O5' A:G297 4.8 12.2 1.0 P A:G338 4.8 26.4 1.0

Magnesium binding site 8 out of 143 in the Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3008 b:19.0 occ:1.00 O A:HOH3436 1.8 5.7 1.0 O A:HOH3340 2.2 30.8 1.0 OP1 A:U419 3.0 16.9 1.0 O A:HOH3408 3.5 21.6 1.0 P A:U419 4.4 25.8 1.0 N7 A:G230 4.8 15.8 1.0

Magnesium binding site 9 out of 143 in the Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3009 b:2.4 occ:1.00 O A:HOH3280 1.8 3.5 1.0 OP2 A:G450 1.9 2.5 1.0 O A:HOH3473 2.2 2.0 1.0 O A:HOH3500 2.6 5.2 1.0 O A:HOH3328 2.9 7.7 1.0 P A:G450 3.0 6.6 1.0 O A:HOH3372 3.2 3.3 1.0 O5' A:G450 3.4 5.4 1.0 OP2 A:U451 3.5 5.5 1.0 OP1 A:G450 3.6 3.8 1.0 OP2 A:G452 4.0 10.9 1.0 O3' A:A449 4.3 6.7 1.0 N E:GLY81 4.3 4.7 1.0 CA E:GLY81 4.4 10.5 1.0 C5' A:G450 4.8 3.7 1.0 N E:GLY82 4.8 1.4 1.0 OP1 A:A449 4.8 4.7 1.0 CG2 E:VAL83 4.8 2.9 1.0 C3' A:A449 4.8 6.3 1.0 P A:U451 4.9 6.7 1.0 O5' A:A449 5.0 0.0 1.0

Magnesium binding site 10 out of 143 in the Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Tnac-Stalled Ribosome Complex with the Titin I27 Domain Folding Close to the Ribosomal Exit Tunnel within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3010 b:8.3 occ:1.00 O A:HOH3361 1.8 3.0 1.0 O A:HOH3551 1.9 7.8 1.0 O6 A:G450 1.9 12.0 1.0 OP1 A:A453 1.9 7.4 1.0 C6 A:G450 3.1 9.6 1.0 P A:A453 3.2 9.3 1.0 O A:HOH3458 3.4 15.3 1.0 O5' A:A453 3.6 5.4 1.0 C5' A:A453 3.7 6.2 1.0 OP1 A:A454 3.7 7.1 1.0 C5 A:G450 4.0 8.3 1.0 OP2 A:A453 4.1 7.5 1.0 N7 A:G450 4.1 12.7 1.0 N1 A:G450 4.2 6.5 1.0 O3' A:G452 4.3 3.8 1.0 P A:A454 4.6 9.4 1.0 N7 A:A449 4.8 7.7 1.0 OP2 A:A454 4.8 6.0 1.0 N6 A:A449 4.9 7.0 1.0 C4' A:A453 4.9 6.2 1.0

P.Tian, A.Steward, R.Kudva, T.Su, P.J.Shilling, A.A.Nickson, J.J.Hollins, R.Beckmann, G.Von Heijne, J.Clarke, R.B.Best. Folding Pathway of An Ig Domain Is Conserved on and Off the Ribosome. Proc. Natl. Acad. Sci. V. 115 11284 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30413621
DOI: 10.1073/PNAS.1810523115