Magnesium in PDB 6i39: Crystal Structure of V13PIZZA6-Ayw, A Circularly Permuted Designer Protein

The structure of Crystal Structure of V13PIZZA6-Ayw, A Circularly Permuted Designer Protein, PDB code: 6i39 was solved by B.Mylemans, H.Noguchi, E.Deridder, A.R.D.Voet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.46 / 1.05
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	69.953, 69.953, 84.782, 90.00, 90.00, 90.00
R / Rfree (%)	14.1 / 16

The binding sites of Magnesium atom in the Crystal Structure of V13PIZZA6-Ayw, A Circularly Permuted Designer Protein (pdb code 6i39). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of V13PIZZA6-Ayw, A Circularly Permuted Designer Protein, PDB code: 6i39:

Magnesium binding site 1 out of 1 in the Crystal Structure of V13PIZZA6-Ayw, A Circularly Permuted Designer Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of V13PIZZA6-Ayw, A Circularly Permuted Designer Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:5.9 occ:1.00 O A:HOH625 2.0 7.0 0.3 O A:HOH420 2.0 7.0 0.3 O A:HOH613 2.0 8.3 0.4 O A:HOH411 2.0 7.8 0.3 O A:HOH602 2.0 6.2 0.3 O A:HOH605 2.0 7.1 0.4 O A:HOH614 2.0 6.3 0.3 O A:HOH409 2.1 8.6 0.3 O A:HOH416 2.1 6.5 0.3 O A:HOH405 2.1 5.8 0.2 O A:HOH725 2.1 7.4 0.3 O A:HOH723 2.1 6.6 0.3 O A:HOH408 2.1 7.3 0.3 O A:HOH608 2.1 7.4 0.3 O A:HOH718 2.1 9.4 0.4 O A:HOH727 2.1 7.7 0.3 O A:HOH726 2.1 7.9 0.3 O A:HOH717 2.2 13.5 0.4 O A:HOH729 4.1 42.5 1.0 O A:HOH683 4.2 9.9 1.0 O A:HOH677 4.2 10.8 1.0 O A:HOH681 4.2 9.2 1.0 O A:HOH685 4.2 10.1 1.0 O A:HOH686 4.2 9.5 1.0 O A:HOH682 4.3 10.1 1.0 O A:SER100 4.3 7.4 1.0 O A:SER184 4.3 7.8 1.0 O A:SER58 4.3 6.8 1.0 O A:SER142 4.3 7.6 1.0 O A:SER268 4.4 6.9 1.0 O A:SER226 4.4 6.9 1.0 O A:HOH527 4.5 11.3 0.4 O A:HOH556 4.6 29.9 1.0 O A:HOH514 4.7 21.7 0.7

B.Mylemans, H.Noguchi, E.Deridder, A.R.D.Voet. Circularization and Circular Permutations of the Symmetric Designer Protein PIZZA6-Ayw To Be Published.