Magnesium in PDB 6i4j: Crystal Structure of Plasmodium Falciparum Actin I (F54Y Mutant) in the Mg-Adp State

Protein crystallography data

The structure of Crystal Structure of Plasmodium Falciparum Actin I (F54Y Mutant) in the Mg-Adp State, PDB code: 6i4j was solved by E.-P.Kumpula, A.J.Lopez, L.Tajedin, H.Han, I.Kursula, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.07 / 1.50
Space group P 21 2 21
Cell size a, b, c (Å), α, β, γ (°) 68.560, 71.350, 109.670, 90.00, 90.00, 90.00
R / Rfree (%) 16.5 / 19.8

Other elements in 6i4j:

The structure of Crystal Structure of Plasmodium Falciparum Actin I (F54Y Mutant) in the Mg-Adp State also contains other interesting chemical elements:

Potassium (K) 1 atom
Calcium (Ca) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Plasmodium Falciparum Actin I (F54Y Mutant) in the Mg-Adp State (pdb code 6i4j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Plasmodium Falciparum Actin I (F54Y Mutant) in the Mg-Adp State, PDB code: 6i4j:

Magnesium binding site 1 out of 1 in 6i4j

Go back to Magnesium Binding Sites List in 6i4j
Magnesium binding site 1 out of 1 in the Crystal Structure of Plasmodium Falciparum Actin I (F54Y Mutant) in the Mg-Adp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Plasmodium Falciparum Actin I (F54Y Mutant) in the Mg-Adp State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:18.5
occ:1.00
O A:HOH616 2.0 19.4 1.0
O A:HOH693 2.1 18.3 1.0
O A:HOH582 2.1 18.2 1.0
O2B A:ADP401 2.1 17.1 1.0
O A:HOH618 2.1 18.1 1.0
O A:HOH543 2.1 19.9 1.0
PB A:ADP401 3.3 18.8 1.0
HZ2 A:LYS19 3.4 26.7 1.0
O1B A:ADP401 3.7 18.9 1.0
HA2 A:GLY14 3.8 26.7 1.0
O A:HOH743 3.8 26.6 1.0
O A:HOH525 4.0 26.9 1.0
O1A A:ADP401 4.0 16.9 1.0
HG21 A:VAL340 4.1 19.1 1.0
O3A A:ADP401 4.1 16.9 1.0
O A:HOH518 4.1 38.9 1.0
HA3 A:GLY157 4.1 26.3 1.0
O A:HOH652 4.2 17.6 1.0
OE1 A:GLN138 4.2 18.1 1.0
OD2 A:ASP155 4.3 21.6 1.0
NZ A:LYS19 4.3 22.3 1.0
OD2 A:ASP12 4.3 19.1 1.0
OD1 A:ASP155 4.3 19.6 1.0
HA3 A:GLY14 4.3 26.7 1.0
OD1 A:ASP12 4.4 16.4 1.0
O3B A:ADP401 4.5 18.2 1.0
CA A:GLY14 4.5 22.2 1.0
PA A:ADP401 4.5 18.7 1.0
H A:SER15 4.5 24.6 1.0
HZ3 A:LYS19 4.6 26.7 1.0
CD A:GLN138 4.6 20.4 1.0
HZ1 A:LYS19 4.6 26.7 1.0
CG A:ASP155 4.7 24.6 1.0
HE3 A:LYS19 4.8 26.3 1.0
HB3 A:GLN138 4.8 16.5 1.0
HG23 A:VAL340 4.8 19.1 1.0
CG A:ASP12 4.8 17.0 1.0
CG2 A:VAL340 4.9 15.9 1.0
O A:HOH573 4.9 28.5 1.0
HG2 A:GLN138 5.0 17.7 1.0
HA2 A:GLY157 5.0 26.3 1.0
CA A:GLY157 5.0 21.9 1.0
HE2 A:LYS19 5.0 26.3 1.0
CE A:LYS19 5.0 21.9 1.0

Reference:

E.P.Kumpula, A.J.Lopez, L.Tajedin, H.Han, I.Kursula. Atomic View Into Plasmodium Actin Polymerization, Atp Hydrolysis, and Fragmentation. Plos Biol. V. 17 00315 2019.
ISSN: ESSN 1545-7885
PubMed: 31199804
DOI: 10.1371/JOURNAL.PBIO.3000315
Page generated: Mon Dec 14 22:56:12 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy