Magnesium in PDB 6i7k: Crystal Structure of Monomeric Ficd Mutant L258D Complexed with Mgatp

Protein crystallography data

The structure of Crystal Structure of Monomeric Ficd Mutant L258D Complexed with Mgatp, PDB code: 6i7k was solved by L.A.Perera, Y.Yan, R.J.Read, D.Ron, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 93.42 / 2.54
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 186.842, 186.842, 76.844, 90.00, 90.00, 120.00
R / Rfree (%) 23.3 / 25.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Monomeric Ficd Mutant L258D Complexed with Mgatp (pdb code 6i7k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Monomeric Ficd Mutant L258D Complexed with Mgatp, PDB code: 6i7k:

Magnesium binding site 1 out of 1 in 6i7k

Go back to Magnesium Binding Sites List in 6i7k
Magnesium binding site 1 out of 1 in the Crystal Structure of Monomeric Ficd Mutant L258D Complexed with Mgatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Monomeric Ficd Mutant L258D Complexed with Mgatp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:53.4
occ:1.00
O A:HOH641 2.1 51.3 1.0
O1B A:ATP502 2.1 56.1 1.0
O A:HOH610 2.1 52.8 1.0
OD1 A:ASP367 2.1 53.5 1.0
O1A A:ATP502 2.1 54.8 1.0
O A:HOH650 2.1 60.0 1.0
CG A:ASP367 3.1 52.3 1.0
PA A:ATP502 3.3 55.2 1.0
PB A:ATP502 3.3 57.5 1.0
OD2 A:ASP367 3.5 53.0 1.0
O3A A:ATP502 3.6 56.5 1.0
O A:HOH675 3.8 52.9 1.0
O3B A:ATP502 3.8 63.2 1.0
O2A A:ATP502 4.0 55.4 1.0
NH2 A:ARG371 4.4 53.8 1.0
O A:HOH657 4.4 48.4 1.0
CB A:ASP367 4.4 51.2 1.0
N A:GLY368 4.5 49.7 1.0
O5' A:ATP502 4.6 54.7 1.0
O2B A:ATP502 4.6 56.6 1.0
CA A:ASP367 4.8 51.0 1.0
C5' A:ATP502 4.9 54.3 1.0

Reference:

L.A.Perera, C.Rato, Y.Yan, L.Neidhardt, S.H.Mclaughlin, R.J.Read, S.Preissler, D.Ron. An Oligomeric State-Dependent Switch in the Er Enzyme Ficd Regulates Ampylation and Deampylation of Bip. Embo J. V. 38 02177 2019.
ISSN: ESSN 1460-2075
PubMed: 31531998
DOI: 10.15252/EMBJ.2019102177
Page generated: Mon Dec 14 22:56:24 2020

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