Magnesium in PDB 6i84: Structure of Transcribing Rna Polymerase II-Nucleosome Complex

Enzymatic activity of Structure of Transcribing Rna Polymerase II-Nucleosome Complex

All present enzymatic activity of Structure of Transcribing Rna Polymerase II-Nucleosome Complex:
2.7.7.6;

Other elements in 6i84:

The structure of Structure of Transcribing Rna Polymerase II-Nucleosome Complex also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Transcribing Rna Polymerase II-Nucleosome Complex (pdb code 6i84). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Transcribing Rna Polymerase II-Nucleosome Complex, PDB code: 6i84:

Magnesium binding site 1 out of 1 in 6i84

Go back to Magnesium Binding Sites List in 6i84
Magnesium binding site 1 out of 1 in the Structure of Transcribing Rna Polymerase II-Nucleosome Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Transcribing Rna Polymerase II-Nucleosome Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1803

b:51.1
occ:1.00
O3' P:A10 2.1 56.9 1.0
OD1 A:ASP485 2.1 35.2 1.0
OD2 A:ASP485 2.1 35.2 1.0
CG A:ASP485 2.4 35.2 1.0
OD2 A:ASP483 2.5 29.5 1.0
C3' P:A10 3.2 56.9 1.0
CG A:ASP483 3.2 29.5 1.0
OD1 A:ASP483 3.3 29.5 1.0
C4' P:A10 3.3 56.9 1.0
OD1 A:ASP481 3.6 25.1 1.0
C5' P:A10 3.6 56.9 1.0
OD2 A:ASP481 3.8 25.1 1.0
CB A:ASP485 3.8 35.2 1.0
O2' P:A10 4.0 56.9 1.0
CG A:ASP481 4.1 25.1 1.0
C2' P:A10 4.2 56.9 1.0
NH2 A:ARG446 4.4 36.6 1.0
CB A:ASP483 4.5 29.5 1.0
CA A:ASP485 4.7 35.2 1.0
O4' P:A10 4.7 56.9 1.0
O5' P:A10 4.9 56.9 1.0
N A:ASP485 4.9 35.2 1.0

Reference:

L.Farnung, S.M.Vos, P.Cramer. Structure of Transcribing Rna Polymerase II-Nucleosome Complex. Nat Commun V. 9 5432 2018.
ISSN: ESSN 2041-1723
PubMed: 30575770
DOI: 10.1038/S41467-018-07870-Y
Page generated: Mon Dec 14 22:56:28 2020

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