Magnesium in PDB 6i8f: Structure of Ester-Hydrolase EH1AB1 From the Metagenome of Lake Arreo

Protein crystallography data

The structure of Structure of Ester-Hydrolase EH1AB1 From the Metagenome of Lake Arreo, PDB code: 6i8f was solved by I.Cea-Rama, J.Sanz-Aparicio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.02 / 2.11
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 82.226, 86.045, 98.166, 90.00, 90.00, 90.00
R / Rfree (%) 16 / 19.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Ester-Hydrolase EH1AB1 From the Metagenome of Lake Arreo (pdb code 6i8f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Ester-Hydrolase EH1AB1 From the Metagenome of Lake Arreo, PDB code: 6i8f:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6i8f

Go back to Magnesium Binding Sites List in 6i8f
Magnesium binding site 1 out of 2 in the Structure of Ester-Hydrolase EH1AB1 From the Metagenome of Lake Arreo


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Ester-Hydrolase EH1AB1 From the Metagenome of Lake Arreo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg412

b:21.8
occ:1.00
O A:HOH644 2.1 21.6 1.0
O A:HOH528 2.1 19.9 1.0
O A:HOH515 2.2 19.1 1.0
O A:HOH532 2.2 20.1 1.0
O A:HOH657 2.2 19.5 1.0
O A:HOH541 2.2 20.1 1.0
OG A:SER101 4.1 17.4 1.0
O A:GLU97 4.2 19.7 1.0
OE1 A:GLU44 4.2 19.8 1.0
O A:HOH604 4.2 28.2 1.0
O A:GLU41 4.2 21.5 1.0
O A:HOH666 4.3 23.1 1.0
O A:HOH560 4.3 23.0 1.0
OE1 A:GLU41 4.3 23.4 1.0
OD2 A:ASP100 4.4 19.4 1.0
O A:HOH649 4.4 29.1 1.0
CB A:ASP100 4.6 18.2 1.0
CD A:PRO47 4.8 21.2 1.0
CB A:GLU41 4.9 22.4 1.0
CG A:PRO47 4.9 20.5 1.0
CG A:ASP100 4.9 18.8 1.0
C A:GLU41 5.0 21.1 1.0

Magnesium binding site 2 out of 2 in 6i8f

Go back to Magnesium Binding Sites List in 6i8f
Magnesium binding site 2 out of 2 in the Structure of Ester-Hydrolase EH1AB1 From the Metagenome of Lake Arreo


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Ester-Hydrolase EH1AB1 From the Metagenome of Lake Arreo within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg410

b:20.5
occ:1.00
O B:HOH524 2.1 17.5 1.0
O B:HOH645 2.1 18.9 1.0
O B:HOH519 2.2 17.7 1.0
O B:HOH662 2.2 19.5 1.0
O B:HOH561 2.2 19.6 1.0
O B:HOH534 2.2 18.5 1.0
O B:HOH586 4.0 22.7 1.0
OG B:SER101 4.1 17.8 1.0
O B:HOH559 4.1 28.1 1.0
O B:HOH664 4.2 39.3 1.0
OE1 B:GLU44 4.2 19.5 1.0
O B:GLU41 4.2 22.1 1.0
O B:HOH573 4.2 22.4 1.0
O B:GLU97 4.2 18.7 1.0
OE1 B:GLU41 4.3 25.5 1.0
OD2 B:ASP100 4.4 17.1 1.0
CB B:ASP100 4.7 17.7 1.0
CD B:PRO47 4.8 21.5 1.0
CB B:GLU41 4.8 24.3 1.0
C B:GLU41 4.9 22.8 1.0
CA B:GLU41 5.0 23.0 1.0

Reference:

I.Cea-Rama, J.Sanz-Aparicio. Structure of Serine Ester Hydrolase EH1AB1 From the Metagenome of Lake Arreo To Be Published.
Page generated: Mon Dec 14 22:56:26 2020

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