Magnesium in PDB 6if3: Complex Structure of RAB35 and Its Effector ACAP2

Protein crystallography data

The structure of Complex Structure of RAB35 and Its Effector ACAP2, PDB code: 6if3 was solved by L.Lin, J.Zhu, R.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.05 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.741, 53.468, 144.008, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 20.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Complex Structure of RAB35 and Its Effector ACAP2 (pdb code 6if3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Complex Structure of RAB35 and Its Effector ACAP2, PDB code: 6if3:

Magnesium binding site 1 out of 1 in 6if3

Go back to Magnesium Binding Sites List in 6if3
Magnesium binding site 1 out of 1 in the Complex Structure of RAB35 and Its Effector ACAP2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Complex Structure of RAB35 and Its Effector ACAP2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg202

b:17.1
occ:1.00
O2G B:GTP201 2.0 18.0 1.0
O B:HOH322 2.1 17.7 1.0
OG1 B:THR40 2.1 17.2 1.0
O B:HOH332 2.1 17.1 1.0
O2B B:GTP201 2.1 16.2 1.0
OG B:SER22 2.2 19.3 1.0
CB B:THR40 3.1 16.9 1.0
CB B:SER22 3.2 18.3 1.0
PG B:GTP201 3.2 18.5 1.0
PB B:GTP201 3.3 17.7 1.0
O3B B:GTP201 3.4 17.1 1.0
N B:THR40 3.8 17.4 1.0
O3G B:GTP201 3.9 18.1 1.0
N B:SER22 4.0 16.0 1.0
CA B:THR40 4.0 16.2 1.0
O1A B:GTP201 4.1 21.6 1.0
OD2 B:ASP63 4.1 20.7 1.0
CG2 B:THR40 4.1 17.6 1.0
CA B:SER22 4.1 17.2 1.0
OD1 B:ASP63 4.2 19.4 1.0
O B:HOH326 4.2 31.5 1.0
O1B B:GTP201 4.3 15.8 1.0
O3A B:GTP201 4.3 16.3 1.0
O1G B:GTP201 4.4 18.7 1.0
O B:ILE38 4.5 23.2 1.0
CG B:ASP63 4.5 19.8 1.0
PA B:GTP201 4.6 18.1 1.0
O B:THR64 4.6 18.4 1.0
O2A B:GTP201 4.7 16.6 1.0
C B:THR39 4.9 22.8 1.0
CB B:LYS21 4.9 13.3 1.0
NZ B:LYS21 5.0 17.8 1.0

Reference:

L.Lin, Y.Shi, M.Wang, C.Wang, J.Zhu, R.Zhang. RAB35/ACAP2 and RAB35/RUSC2 Complex Structures Reveal Molecular Basis For Effector Recognition By RAB35 Gtpase. Structure V. 27 729 2019.
ISSN: ISSN 0969-2126
PubMed: 30905672
DOI: 10.1016/J.STR.2019.02.008
Page generated: Mon Dec 14 22:57:03 2020

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