Magnesium in PDB 6if7: Crystal Structure of AA10 Lytic Polysaccharide Monooxygenase From Tectaria Macrodonta

Protein crystallography data

The structure of Crystal Structure of AA10 Lytic Polysaccharide Monooxygenase From Tectaria Macrodonta, PDB code: 6if7 was solved by A.Archana, S.K.Yadav, P.K.Singh, P.G.Vasudev, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.02 / 2.20
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.221, 79.221, 68.239, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 22.9

Other elements in 6if7:

The structure of Crystal Structure of AA10 Lytic Polysaccharide Monooxygenase From Tectaria Macrodonta also contains other interesting chemical elements:

Copper (Cu) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of AA10 Lytic Polysaccharide Monooxygenase From Tectaria Macrodonta (pdb code 6if7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of AA10 Lytic Polysaccharide Monooxygenase From Tectaria Macrodonta, PDB code: 6if7:

Magnesium binding site 1 out of 1 in 6if7

Go back to Magnesium Binding Sites List in 6if7
Magnesium binding site 1 out of 1 in the Crystal Structure of AA10 Lytic Polysaccharide Monooxygenase From Tectaria Macrodonta


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of AA10 Lytic Polysaccharide Monooxygenase From Tectaria Macrodonta within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg257

b:52.0
occ:0.50
O A:HOH335 2.9 25.7 1.0
O A:HOH356 3.0 22.8 1.0
O A:ASN158 3.7 28.4 1.0
CB A:VAL159 3.8 25.6 1.0
CG2 A:VAL159 4.0 25.9 1.0
CG2 A:ILE157 4.1 30.5 1.0
O A:THR172 4.2 24.9 1.0
C A:ASN158 4.3 27.1 1.0
CA A:VAL159 4.4 26.4 1.0
N A:VAL159 4.7 26.7 1.0
N A:ASN158 4.8 27.0 1.0
O A:HOH361 4.9 22.6 1.0
CG1 A:VAL159 4.9 27.1 1.0

Reference:

S.K.Yadav, R.Singh, P.K.Singh, P.G.Vasudev. Insecticidal Fern Protein TMA12 Is Possibly A Lytic Polysaccharide Monooxygenase. Planta V. 249 1987 2019.
ISSN: ISSN 0032-0935
PubMed: 30903269
DOI: 10.1007/S00425-019-03135-0
Page generated: Mon Dec 14 22:57:04 2020

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