Magnesium in PDB 6ifh: Unphosphorylated SPO0F From Paenisporosarcina Sp. Tg-14

Protein crystallography data

The structure of Unphosphorylated SPO0F From Paenisporosarcina Sp. Tg-14, PDB code: 6ifh was solved by J.H.Lee, C.W.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.75 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 29.518, 49.361, 67.067, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 22.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Unphosphorylated SPO0F From Paenisporosarcina Sp. Tg-14 (pdb code 6ifh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Unphosphorylated SPO0F From Paenisporosarcina Sp. Tg-14, PDB code: 6ifh:

Magnesium binding site 1 out of 1 in 6ifh

Go back to Magnesium Binding Sites List in 6ifh
Magnesium binding site 1 out of 1 in the Unphosphorylated SPO0F From Paenisporosarcina Sp. Tg-14


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Unphosphorylated SPO0F From Paenisporosarcina Sp. Tg-14 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg201

b:19.0
occ:1.00
O A:LYS54 2.3 27.2 1.0
OD1 A:ASP9 2.3 30.7 1.0
OD2 A:ASP52 2.4 29.9 1.0
O A:HOH308 2.4 24.7 1.0
OD1 A:ASP8 2.5 34.1 1.0
O A:HOH311 2.5 48.0 1.0
O A:HOH342 2.6 34.9 1.0
CG A:ASP52 3.3 28.4 1.0
CG A:ASP9 3.5 31.2 1.0
C A:LYS54 3.5 27.6 1.0
CG A:ASP8 3.6 32.9 1.0
OD2 A:ASP8 3.9 33.3 1.0
OD2 A:ASP9 3.9 33.7 1.0
OD1 A:ASP52 4.0 38.3 1.0
CB A:ASP52 4.1 23.6 1.0
CA A:LYS54 4.3 31.0 1.0
CB A:LYS54 4.4 31.8 1.0
N A:ASP9 4.4 24.8 1.0
N A:ILE55 4.5 25.9 1.0
N A:LYS54 4.5 28.0 1.0
CG1 A:ILE55 4.6 25.6 1.0
NZ A:LYS102 4.6 50.3 1.0
CB A:ASP9 4.7 29.8 1.0
CA A:ILE55 4.7 26.0 1.0
O A:HOH330 4.8 47.9 1.0
OE1 A:GLN10 4.9 28.5 1.0
N A:GLN10 4.9 23.5 1.0
CB A:ASP8 5.0 25.2 1.0

Reference:

C.W.Lee, S.H.Park, C.Jeong, C.S.Lee, J.W.Hong, H.H.Park, H.Park, H.J.Park, J.H.Lee. Crystal Structure of Unphosphorylated SPO0F From Paenisporosarcina Sp. Tg-14, A Psychrophilic Bacterium Isolated From An Antarctic Glacier Biodesign V.6(4) 84 2019.
ISSN: ISSN 2288-6982
Page generated: Mon Dec 14 22:57:05 2020

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