Magnesium in PDB 6ifk: Cryo-Em Structure of Type III-A Csm-CTR1 Complex, Amppnp Bound

The structure of Cryo-Em Structure of Type III-A Csm-CTR1 Complex, Amppnp Bound also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the Cryo-Em Structure of Type III-A Csm-CTR1 Complex, Amppnp Bound (pdb code 6ifk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Type III-A Csm-CTR1 Complex, Amppnp Bound, PDB code: 6ifk:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Type III-A Csm-CTR1 Complex, Amppnp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Type III-A Csm-CTR1 Complex, Amppnp Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:39.9 occ:1.00 O1A A:ANP801 2.0 45.5 1.0 OD2 A:ASP519 2.1 35.6 1.0 O2B A:ANP801 2.1 45.5 1.0 OD1 A:ASP519 2.2 35.6 1.0 CG A:ASP519 2.3 35.6 1.0 O1G A:ANP801 2.3 45.5 1.0 O A:VAL520 2.7 36.5 1.0 O3G A:ANP801 2.8 45.5 1.0 MG A:MG804 2.9 44.7 1.0 PG A:ANP801 3.1 45.5 1.0 PA A:ANP801 3.2 45.5 1.0 PB A:ANP801 3.4 45.5 1.0 OD2 A:ASP577 3.5 41.1 1.0 CB A:ASP519 3.6 35.6 1.0 O3A A:ANP801 3.7 45.5 1.0 NZ A:LYS637 3.8 36.3 1.0 C A:VAL520 3.8 36.5 1.0 O2A A:ANP801 3.9 45.5 1.0 N3B A:ANP801 3.9 45.5 1.0 CG A:ASP577 4.3 41.1 1.0 N A:VAL520 4.3 36.5 1.0 C A:ASP519 4.4 35.6 1.0 O2G A:ANP801 4.4 45.5 1.0 O5' A:ANP801 4.5 45.5 1.0 N A:ASP522 4.5 46.1 1.0 CA A:ASP519 4.5 35.6 1.0 CA A:ASP521 4.5 39.5 1.0 O1B A:ANP801 4.6 45.5 1.0 N A:ASP521 4.6 39.5 1.0 CA A:VAL520 4.7 36.5 1.0 OD1 A:ASP577 4.7 41.1 1.0 CE A:LYS637 4.7 36.3 1.0 C A:ASP521 4.9 39.5 1.0 O A:ASP519 4.9 35.6 1.0 C5' A:ANP801 4.9 45.5 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Type III-A Csm-CTR1 Complex, Amppnp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Type III-A Csm-CTR1 Complex, Amppnp Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg804 b:44.7 occ:1.00 OD1 A:ASP519 2.2 35.6 1.0 OD2 A:ASP519 2.3 35.6 1.0 CG A:ASP519 2.4 35.6 1.0 O1A A:ANP801 2.5 45.5 1.0 MG A:MG803 2.9 39.9 1.0 OD1 A:ASP577 3.0 41.1 1.0 OD2 A:ASP577 3.4 41.1 1.0 CG A:ASP577 3.4 41.1 1.0 PA A:ANP801 3.5 45.5 1.0 O2A A:ANP801 3.6 45.5 1.0 CB A:ASP519 3.7 35.6 1.0 O3' A:ANP802 3.9 59.9 1.0 O5' A:ANP801 4.2 45.5 1.0 O2' A:ANP802 4.3 59.9 1.0 CA A:ASP519 4.4 35.6 1.0 O2B A:ANP801 4.5 45.5 1.0 O3G A:ANP801 4.5 45.5 1.0 O A:ASP577 4.6 41.1 1.0 CB A:ASP577 4.6 41.1 1.0 C A:ASP577 4.7 41.1 1.0 O3A A:ANP801 4.9 45.5 1.0 O A:VAL520 4.9 36.5 1.0 N A:ASP578 5.0 38.1 1.0

L.You, J.Ma, J.Wang, D.Artamonova, M.Wang, L.Liu, H.Xiang, K.Severinov, X.Zhang, Y.Wang. Structure Studies of the Crispr-Csm Complex Reveal Mechanism of Co-Transcriptional Interference Cell V. 176 239 2019.
ISSN: ISSN 1097-4172
PubMed: 30503210
DOI: 10.1016/J.CELL.2018.10.052