Magnesium in PDB 6igz: Structure of Psi-Lhci

Other elements in 6igz:

The structure of Structure of Psi-Lhci also contains other interesting chemical elements:

Iron (Fe) 12 atoms

Magnesium Binding Sites:

Magnesium binding site 1 out of 244 in 6igz

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Magnesium binding site 1 out of 244 in the Structure of Psi-Lhci


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Psi-Lhci within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg801

b:40.6
occ:1.00
MG A:CLA801 0.0 40.6 1.0
NB A:CLA801 2.0 50.0 1.0
ND A:CLA801 2.0 44.2 1.0
NC A:CLA801 2.1 48.8 1.0
NA A:CLA801 2.1 44.9 1.0
C4D A:CLA801 2.9 40.5 1.0
CE1 A:HIS681 2.9 30.0 1.0
C1B A:CLA801 3.0 46.8 1.0
C4A A:CLA801 3.0 43.8 1.0
C4B A:CLA801 3.0 49.4 1.0
C1C A:CLA801 3.1 48.9 1.0
C1D A:CLA801 3.1 45.6 1.0
C1A A:CLA801 3.1 42.4 1.0
C4C A:CLA801 3.1 47.2 1.0
CHB A:CLA801 3.4 42.7 1.0
CHC A:CLA801 3.4 49.0 1.0
CHA A:CLA801 3.4 40.5 1.0
CHD A:CLA801 3.5 44.0 1.0
CAB B:CLA805 3.8 50.0 1.0
ND1 A:HIS681 3.8 30.0 1.0
NE2 A:HIS681 3.8 30.0 1.0
C3B B:CLA805 4.0 50.2 1.0
C3D A:CLA801 4.2 40.6 1.0
CHC B:CLA805 4.2 46.4 1.0
C4B B:CLA805 4.3 49.9 1.0
C2B A:CLA801 4.3 45.9 1.0
C3B A:CLA801 4.3 49.0 1.0
C2D A:CLA801 4.3 41.8 1.0
C2C A:CLA801 4.3 48.2 1.0
C3C A:CLA801 4.3 48.9 1.0
C3A A:CLA801 4.4 43.2 1.0
C2A A:CLA801 4.4 41.1 1.0
CBB B:CLA805 4.6 50.4 1.0
C2B B:CLA805 4.8 51.8 1.0
CBD A:CLA801 4.8 41.9 1.0
CD2 A:HIS681 4.9 30.0 1.0
CG A:HIS681 4.9 30.0 1.0
C1C B:CLA805 5.0 47.3 1.0
CMA A:CLA801 5.0 43.3 1.0

Magnesium binding site 2 out of 244 in 6igz

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Magnesium binding site 2 out of 244 in the Structure of Psi-Lhci


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Psi-Lhci within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:59.8
occ:1.00
MG A:CLA802 0.0 59.8 1.0
NB A:CLA802 2.0 50.4 1.0
ND A:CLA802 2.0 42.9 1.0
NA A:CLA802 2.1 46.3 1.0
NC A:CLA802 2.1 40.9 1.0
C4D A:CLA802 2.9 42.4 1.0
C1B A:CLA802 3.0 48.9 1.0
C4A A:CLA802 3.0 45.7 1.0
C4B A:CLA802 3.0 48.5 1.0
C1C A:CLA802 3.1 41.5 1.0
C1D A:CLA802 3.1 43.8 1.0
C4C A:CLA802 3.1 41.4 1.0
C1A A:CLA802 3.1 43.8 1.0
CBB B:CLA806 3.3 40.6 1.0
CHB A:CLA802 3.4 47.0 1.0
CHC A:CLA802 3.4 43.4 1.0
CHA A:CLA802 3.4 44.0 1.0
CHD A:CLA802 3.5 41.9 1.0
CAB B:CLA806 4.1 41.6 1.0
C20 A:CLA801 4.2 44.1 1.0
C2B A:CLA802 4.2 50.5 1.0
C3D A:CLA802 4.2 44.7 1.0
C3B A:CLA802 4.2 50.9 1.0
C2C A:CLA802 4.3 42.6 1.0
C2D A:CLA802 4.3 40.0 1.0
C3C A:CLA802 4.3 40.5 1.0
CB B:ALA658 4.4 30.0 1.0
C3A A:CLA802 4.4 41.6 1.0
C2A A:CLA802 4.4 42.2 1.0
ND2 A:ASN606 4.6 30.0 1.0
C4 A:CLA801 4.7 44.0 1.0
C3B B:CLA806 4.9 41.7 1.0
CBD A:CLA802 4.9 44.3 1.0
C3 A:CLA801 4.9 45.0 1.0

Magnesium binding site 3 out of 244 in 6igz

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Magnesium binding site 3 out of 244 in the Structure of Psi-Lhci


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Psi-Lhci within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg803

b:46.6
occ:1.00
MG A:CLA803 0.0 46.6 1.0
NB A:CLA803 2.0 56.2 1.0
ND A:CLA803 2.0 56.2 1.0
NC A:CLA803 2.1 56.0 1.0
NA A:CLA803 2.1 59.0 1.0
C4D A:CLA803 2.9 57.8 1.0
C1B A:CLA803 3.0 56.9 1.0
NE2 A:HIS58 3.0 30.0 1.0
C4A A:CLA803 3.0 57.5 1.0
C4B A:CLA803 3.0 56.7 1.0
C1C A:CLA803 3.1 56.0 1.0
C4C A:CLA803 3.1 56.6 1.0
C1D A:CLA803 3.1 56.5 1.0
C1A A:CLA803 3.1 58.5 1.0
CHB A:CLA803 3.4 56.8 1.0
CHC A:CLA803 3.4 56.0 1.0
CHA A:CLA803 3.4 59.1 1.0
CHD A:CLA803 3.5 56.5 1.0
CG J:PRO12 3.6 30.0 1.0
CB J:PRO12 3.9 30.0 1.0
CE1 A:HIS58 3.9 30.0 1.0
CD2 A:HIS58 3.9 30.0 1.0
C3D A:CLA803 4.2 58.4 1.0
C2B A:CLA803 4.3 56.2 1.0
C3B A:CLA803 4.3 58.3 1.0
C2C A:CLA803 4.3 57.0 1.0
C2D A:CLA803 4.3 57.3 1.0
C3C A:CLA803 4.3 57.7 1.0
C3A A:CLA803 4.4 56.4 1.0
C2A A:CLA803 4.4 57.0 1.0
CD J:PRO12 4.6 30.0 1.0
CBD A:CLA803 4.9 59.4 1.0
C05 J:8CT101 4.9 30.0 1.0

Magnesium binding site 4 out of 244 in 6igz

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Magnesium binding site 4 out of 244 in the Structure of Psi-Lhci


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Psi-Lhci within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg804

b:48.6
occ:1.00
MG A:CLA804 0.0 48.6 1.0
NB A:CLA804 2.0 50.9 1.0
ND A:CLA804 2.0 52.6 1.0
NA A:CLA804 2.1 58.9 1.0
NC A:CLA804 2.1 51.0 1.0
CE1 A:HIS62 2.9 30.0 1.0
C4D A:CLA804 2.9 55.4 1.0
C1B A:CLA804 3.0 51.3 1.0
NE2 A:HIS62 3.0 30.0 1.0
C4A A:CLA804 3.0 56.5 1.0
C4B A:CLA804 3.0 48.8 1.0
C1C A:CLA804 3.1 48.4 1.0
C1D A:CLA804 3.1 52.9 1.0
C4C A:CLA804 3.1 48.4 1.0
C1A A:CLA804 3.1 59.2 1.0
CHB A:CLA804 3.4 52.8 1.0
CHC A:CLA804 3.4 47.0 1.0
CHA A:CLA804 3.5 58.7 1.0
CHD A:CLA804 3.5 50.8 1.0
C7 A:CLA811 4.2 65.0 1.0
ND1 A:HIS62 4.2 30.0 1.0
C3D A:CLA804 4.2 55.6 1.0
C2B A:CLA804 4.3 49.3 1.0
C3B A:CLA804 4.3 48.8 1.0
C2D A:CLA804 4.3 54.1 1.0
C2C A:CLA804 4.3 49.0 1.0
CD2 A:HIS62 4.3 30.0 1.0
C3C A:CLA804 4.3 48.5 1.0
C3A A:CLA804 4.4 57.6 1.0
C2A A:CLA804 4.4 60.3 1.0
C10 A:CLA811 4.6 65.9 1.0
C8 A:CLA811 4.9 64.7 1.0
CG A:HIS62 4.9 30.0 1.0
C5 A:CLA811 4.9 70.5 1.0
CBD A:CLA804 4.9 59.1 1.0

Magnesium binding site 5 out of 244 in 6igz

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Magnesium binding site 5 out of 244 in the Structure of Psi-Lhci


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Psi-Lhci within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg805

b:46.4
occ:1.00
MG A:CLA805 0.0 46.4 1.0
NB A:CLA805 2.0 46.4 1.0
ND A:CLA805 2.0 46.5 1.0
NC A:CLA805 2.1 46.5 1.0
NA A:CLA805 2.1 50.9 1.0
C4D A:CLA805 2.9 47.9 1.0
CE1 A:HIS82 3.0 30.0 1.0
C1B A:CLA805 3.0 47.8 1.0
C4B A:CLA805 3.0 46.5 1.0
C4A A:CLA805 3.0 50.2 1.0
C1C A:CLA805 3.0 48.0 1.0
C1A A:CLA805 3.1 51.7 1.0
C4C A:CLA805 3.1 46.5 1.0
C1D A:CLA805 3.1 46.9 1.0
CMB A:CLA830 3.2 55.4 1.0
CHB A:CLA805 3.4 50.4 1.0
CHC A:CLA805 3.4 49.2 1.0
CHA A:CLA805 3.4 50.9 1.0
CHD A:CLA805 3.5 47.2 1.0
ND1 A:HIS82 3.7 30.0 1.0
NE2 A:HIS82 3.9 30.0 1.0
C3D A:CLA805 4.2 48.1 1.0
C2B A:CLA805 4.3 50.9 1.0
C3B A:CLA805 4.3 47.2 1.0
C2C A:CLA805 4.3 47.6 1.0
C3C A:CLA805 4.3 49.8 1.0
C2D A:CLA805 4.3 47.8 1.0
C3A A:CLA805 4.4 52.1 1.0
C2A A:CLA805 4.4 52.1 1.0
CBB A:CLA830 4.4 53.5 1.0
C2B A:CLA830 4.6 54.7 1.0
CG A:HIS82 4.8 30.0 1.0
CBD A:CLA805 4.9 51.8 1.0
CD2 A:HIS82 4.9 30.0 1.0

Magnesium binding site 6 out of 244 in 6igz

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Magnesium binding site 6 out of 244 in the Structure of Psi-Lhci


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Psi-Lhci within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg806

b:69.1
occ:1.00
MG A:CLA806 0.0 69.1 1.0
NB A:CLA806 2.0 44.8 1.0
ND A:CLA806 2.0 45.0 1.0
NC A:CLA806 2.1 47.0 1.0
NA A:CLA806 2.1 49.7 1.0
NE2 A:GLN85 2.9 30.0 1.0
C4D A:CLA806 2.9 45.2 1.0
C1B A:CLA806 3.0 44.6 1.0
C4A A:CLA806 3.0 47.1 1.0
C4B A:CLA806 3.0 45.8 1.0
C1C A:CLA806 3.1 45.0 1.0
C4C A:CLA806 3.1 45.1 1.0
C1D A:CLA806 3.1 45.2 1.0
C1A A:CLA806 3.1 49.3 1.0
CD A:GLN85 3.3 30.0 1.0
CHB A:CLA806 3.4 47.3 1.0
OE1 A:GLN85 3.4 30.0 1.0
CHC A:CLA806 3.4 44.9 1.0
CHA A:CLA806 3.4 46.6 1.0
C17 A:CLA806 3.5 49.4 1.0
CHD A:CLA806 3.5 45.2 1.0
C16 A:CLA806 3.9 48.3 1.0
C3D A:CLA806 4.2 45.2 1.0
C2B A:CLA806 4.2 44.5 1.0
C3B A:CLA806 4.3 44.6 1.0
C2C A:CLA806 4.3 45.1 1.0
C2D A:CLA806 4.3 45.2 1.0
C3C A:CLA806 4.3 45.2 1.0
C20 A:CLA806 4.4 44.0 1.0
C3A A:CLA806 4.4 47.7 1.0
C18 A:CLA806 4.4 47.0 1.0
C2A A:CLA806 4.5 50.0 1.0
CG A:GLN85 4.5 30.0 1.0
C19 A:CLA806 4.8 49.7 1.0
CMA A:CLA805 4.9 52.4 1.0
CBD A:CLA806 4.9 47.1 1.0

Magnesium binding site 7 out of 244 in 6igz

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Magnesium binding site 7 out of 244 in the Structure of Psi-Lhci


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of Psi-Lhci within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg807

b:66.2
occ:1.00
MG A:CLA807 0.0 66.2 1.0
NB A:CLA807 2.0 61.4 1.0
ND A:CLA807 2.0 60.3 1.0
NC A:CLA807 2.1 60.4 1.0
NA A:CLA807 2.1 61.6 1.0
NE2 A:HIS99 2.9 30.0 1.0
C4D A:CLA807 2.9 60.4 1.0
C1B A:CLA807 3.0 61.2 1.0
C4A A:CLA807 3.0 60.6 1.0
C4B A:CLA807 3.0 60.8 1.0
C1C A:CLA807 3.1 60.9 1.0
C4C A:CLA807 3.1 61.1 1.0
C1A A:CLA807 3.1 61.5 1.0
C1D A:CLA807 3.1 61.2 1.0
CE1 A:HIS99 3.2 30.0 1.0
CHB A:CLA807 3.4 61.1 1.0
CHC A:CLA807 3.4 61.5 1.0
CHA A:CLA807 3.4 60.7 1.0
CHD A:CLA807 3.5 62.3 1.0
CD2 A:HIS99 4.2 30.0 1.0
C3D A:CLA807 4.2 59.9 1.0
C2B A:CLA807 4.3 60.4 1.0
C3B A:CLA807 4.3 60.3 1.0
C2C A:CLA807 4.3 59.4 1.0
C2D A:CLA807 4.3 60.2 1.0
C3C A:CLA807 4.3 59.1 1.0
C3A A:CLA807 4.4 58.4 1.0
C2A A:CLA807 4.4 61.2 1.0
ND1 A:HIS99 4.4 30.0 1.0
CBD A:CLA807 4.9 60.2 1.0
CG A:HIS99 5.0 30.0 1.0
CBA A:CLA807 5.0 65.2 1.0

Magnesium binding site 8 out of 244 in 6igz

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Magnesium binding site 8 out of 244 in the Structure of Psi-Lhci


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of Psi-Lhci within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg808

b:50.3
occ:1.00
MG A:CLA808 0.0 50.3 1.0
NB A:CLA808 2.0 50.5 1.0
ND A:CLA808 2.0 47.0 1.0
NC A:CLA808 2.1 51.0 1.0
NA A:CLA808 2.1 51.4 1.0
OE1 A:GLN121 2.7 30.0 1.0
C4D A:CLA808 2.9 48.7 1.0
C1B A:CLA808 3.0 51.2 1.0
C4A A:CLA808 3.0 52.0 1.0
C4B A:CLA808 3.1 49.9 1.0
C1C A:CLA808 3.1 50.2 1.0
C4C A:CLA808 3.1 49.5 1.0
C1D A:CLA808 3.1 46.1 1.0
C1A A:CLA808 3.1 52.9 1.0
CHB A:CLA808 3.4 51.2 1.0
CHC A:CLA808 3.4 49.9 1.0
CHA A:CLA808 3.5 48.8 1.0
CHD A:CLA808 3.5 47.7 1.0
CD A:GLN121 3.5 30.0 1.0
C5 A:CLA828 3.7 55.0 1.0
NE2 A:GLN121 3.7 30.0 1.0
C3D A:CLA808 4.2 46.8 1.0
C2B A:CLA808 4.3 51.8 1.0
C3B A:CLA808 4.3 50.3 1.0
C2C A:CLA808 4.3 48.3 1.0
C2D A:CLA808 4.3 46.6 1.0
C3C A:CLA808 4.3 49.5 1.0
C3A A:CLA808 4.4 54.1 1.0
C3 A:CLA828 4.4 56.4 1.0
C2A A:CLA808 4.4 55.4 1.0
C2 A:CLA828 4.5 55.7 1.0
C6 A:CLA828 4.9 56.0 1.0
CG A:GLN121 4.9 30.0 1.0
CBD A:CLA808 4.9 48.5 1.0

Magnesium binding site 9 out of 244 in 6igz

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Magnesium binding site 9 out of 244 in the Structure of Psi-Lhci


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of Psi-Lhci within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg809

b:55.6
occ:1.00
MG A:CLA809 0.0 55.6 1.0
NB A:CLA809 2.0 47.7 1.0
ND A:CLA809 2.0 44.7 1.0
NC A:CLA809 2.1 44.4 1.0
NA A:CLA809 2.1 48.6 1.0
OE1 A:GLN129 2.7 30.0 1.0
C4D A:CLA809 2.9 47.8 1.0
C1B A:CLA809 3.0 48.3 1.0
C4B A:CLA809 3.0 47.9 1.0
C4A A:CLA809 3.0 50.1 1.0
C1C A:CLA809 3.1 46.1 1.0
C1D A:CLA809 3.1 49.1 1.0
C1A A:CLA809 3.1 48.7 1.0
C4C A:CLA809 3.1 44.2 1.0
CHB A:CLA809 3.4 49.2 1.0
CHC A:CLA809 3.4 46.8 1.0
CHA A:CLA809 3.4 49.5 1.0
CD A:GLN129 3.5 30.0 1.0
CHD A:CLA809 3.5 48.2 1.0
NE2 A:GLN129 3.5 30.0 1.0
C17 A:CLA828 4.0 49.7 1.0
C3D A:CLA809 4.2 49.5 1.0
C2B A:CLA809 4.2 48.5 1.0
C3B A:CLA809 4.3 48.8 1.0
C2D A:CLA809 4.3 44.6 1.0
C2C A:CLA809 4.3 44.6 1.0
C3C A:CLA809 4.4 43.9 1.0
C3A A:CLA809 4.4 52.9 1.0
C2A A:CLA809 4.4 53.9 1.0
C18 A:CLA828 4.5 48.8 1.0
CG A:GLN129 4.8 30.0 1.0
CBD A:CLA809 4.9 49.1 1.0

Magnesium binding site 10 out of 244 in 6igz

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Magnesium binding site 10 out of 244 in the Structure of Psi-Lhci


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of Psi-Lhci within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg810

b:83.5
occ:1.00
MG A:CLA810 0.0 83.5 1.0
NB A:CLA810 2.0 56.4 1.0
ND A:CLA810 2.0 64.1 1.0
NA A:CLA810 2.1 69.3 1.0
NC A:CLA810 2.1 56.2 1.0
NE2 A:HIS185 2.8 30.0 1.0
C4D A:CLA810 2.9 64.9 1.0
C1B A:CLA810 3.0 58.4 1.0
C4A A:CLA810 3.0 68.5 1.0
C1C A:CLA810 3.0 56.9 1.0
C4B A:CLA810 3.0 56.7 1.0
C1A A:CLA810 3.1 69.4 1.0
C4C A:CLA810 3.1 57.2 1.0
C1D A:CLA810 3.1 62.3 1.0
CE1 A:HIS185 3.3 30.0 1.0
CHB A:CLA810 3.4 63.9 1.0
CHC A:CLA810 3.4 56.0 1.0
CHA A:CLA810 3.4 67.4 1.0
CHD A:CLA810 3.5 59.5 1.0
C19 A:CLA813 3.7 60.3 1.0
C18 A:CLA813 3.7 59.4 1.0
CD2 A:HIS185 4.0 30.0 1.0
C3D A:CLA810 4.2 63.5 1.0
C2B A:CLA810 4.3 57.5 1.0
C3B A:CLA810 4.3 59.2 1.0
C2C A:CLA810 4.3 56.1 1.0
C2D A:CLA810 4.3 62.3 1.0
C3C A:CLA810 4.3 55.7 1.0
C3A A:CLA810 4.4 69.8 1.0
C2A A:CLA810 4.4 72.2 1.0
C17 A:CLA813 4.5 61.7 1.0
ND1 A:HIS185 4.6 30.0 1.0
CBA A:CLA810 4.8 80.5 1.0
C20 A:CLA813 4.9 58.4 1.0
CBD A:CLA810 4.9 67.1 1.0
CG A:HIS185 4.9 30.0 1.0

Reference:

X.Qin, X.Pi, W.Wang, G.Han, L.Zhu, M.Liu, L.Cheng, J.R.Shen, T.Kuang, S.F.Sui. Structure of A Green Algal Photosystem I in Complex with A Large Number of Light-Harvesting Complex I Subunits. Nat Plants V. 5 263 2019.
ISSN: ESSN 2055-0278
PubMed: 30850820
DOI: 10.1038/S41477-019-0379-Y
Page generated: Mon Dec 14 22:57:17 2020

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