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Magnesium in PDB 6ijj: Photosystem I of Chlamydomonas Reinhardtii

Other elements in 6ijj:

The structure of Photosystem I of Chlamydomonas Reinhardtii also contains other interesting chemical elements:

Iron (Fe) 12 atoms

Magnesium Binding Sites:

Magnesium binding site 1 out of 216 in 6ijj

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Magnesium binding site 1 out of 216 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg801

b:48.4
occ:1.00
MG A:CLA801 0.0 48.4 1.0
NB A:CLA801 2.0 48.4 1.0
ND A:CLA801 2.0 48.4 1.0
NA A:CLA801 2.1 48.4 1.0
NC A:CLA801 2.1 48.4 1.0
NE2 A:HIS676 2.3 30.3 1.0
C4D A:CLA801 2.9 48.4 1.0
C1B A:CLA801 3.0 48.4 1.0
C4A A:CLA801 3.0 48.4 1.0
C4B A:CLA801 3.0 48.4 1.0
C1C A:CLA801 3.1 48.4 1.0
C1D A:CLA801 3.1 48.4 1.0
C1A A:CLA801 3.1 48.4 1.0
C4C A:CLA801 3.1 48.4 1.0
CE1 A:HIS676 3.3 30.3 1.0
CD2 A:HIS676 3.3 30.3 1.0
CHB A:CLA801 3.4 48.4 1.0
CHA A:CLA801 3.4 48.4 1.0
CHC A:CLA801 3.4 48.4 1.0
CHD A:CLA801 3.5 48.4 1.0
CAB B:CLA802 3.7 31.1 1.0
C3B B:CLA802 4.0 31.1 1.0
CHC B:CLA802 4.2 31.1 1.0
C3D A:CLA801 4.2 48.4 1.0
C4B B:CLA802 4.3 31.1 1.0
C2B A:CLA801 4.3 48.4 1.0
C3B A:CLA801 4.3 48.4 1.0
C2D A:CLA801 4.3 48.4 1.0
C2C A:CLA801 4.3 48.4 1.0
C3A A:CLA801 4.3 48.4 1.0
C3C A:CLA801 4.4 48.4 1.0
ND1 A:HIS676 4.4 30.3 1.0
C2A A:CLA801 4.4 48.4 1.0
CG A:HIS676 4.4 30.3 1.0
C2B B:CLA802 4.8 31.1 1.0
CMA A:CLA801 4.8 48.4 1.0
CBD A:CLA801 4.9 48.4 1.0
CBB B:CLA802 4.9 31.1 1.0
C1C B:CLA802 4.9 31.1 1.0
CED A:CLA854 4.9 33.5 1.0

Magnesium binding site 2 out of 216 in 6ijj

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Magnesium binding site 2 out of 216 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:31.4
occ:1.00
MG A:CLA802 0.0 31.4 1.0
ND A:CLA802 2.0 31.4 1.0
NB A:CLA802 2.0 31.4 1.0
NC A:CLA802 2.1 31.4 1.0
NA A:CLA802 2.1 31.4 1.0
NE1 B:TRP583 2.5 25.0 1.0
C4D A:CLA802 2.9 31.4 1.0
C1B A:CLA802 3.0 31.4 1.0
C4A A:CLA802 3.0 31.4 1.0
C1C A:CLA802 3.1 31.4 1.0
C4B A:CLA802 3.1 31.4 1.0
C1D A:CLA802 3.1 31.4 1.0
C4C A:CLA802 3.1 31.4 1.0
C1A A:CLA802 3.1 31.4 1.0
SD A:MET684 3.3 24.0 1.0
CHB A:CLA802 3.4 31.4 1.0
CE2 B:TRP583 3.4 25.0 1.0
CHC A:CLA802 3.4 31.4 1.0
CHD A:CLA802 3.5 31.4 1.0
CHA A:CLA802 3.5 31.4 1.0
CD1 B:TRP583 3.6 25.0 1.0
CZ2 B:TRP583 3.7 25.0 1.0
CG A:MET684 3.9 24.0 1.0
C3D A:CLA802 4.2 31.4 1.0
C2B A:CLA802 4.3 31.4 1.0
C2D A:CLA802 4.3 31.4 1.0
C2C A:CLA802 4.3 31.4 1.0
C3B A:CLA802 4.3 31.4 1.0
C3C A:CLA802 4.3 31.4 1.0
C3A A:CLA802 4.3 31.4 1.0
CB A:MET684 4.4 24.0 1.0
C2A A:CLA802 4.4 31.4 1.0
CMC A:CLA854 4.6 33.5 1.0
CD2 B:TRP583 4.7 25.0 1.0
CG B:TRP583 4.8 25.0 1.0
CE A:MET684 4.9 24.0 1.0
CBD A:CLA802 4.9 31.4 1.0

Magnesium binding site 3 out of 216 in 6ijj

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Magnesium binding site 3 out of 216 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg803

b:48.4
occ:1.00
MG A:CLA803 0.0 48.4 1.0
NB A:CLA803 2.0 48.4 1.0
ND A:CLA803 2.0 48.4 1.0
NC A:CLA803 2.1 48.4 1.0
NA A:CLA803 2.1 48.4 1.0
C4D A:CLA803 2.9 48.4 1.0
C1B A:CLA803 2.9 48.4 1.0
C4B A:CLA803 3.0 48.4 1.0
C4A A:CLA803 3.0 48.4 1.0
C1C A:CLA803 3.1 48.4 1.0
C1D A:CLA803 3.1 48.4 1.0
C4C A:CLA803 3.1 48.4 1.0
C1A A:CLA803 3.1 48.4 1.0
CHB A:CLA803 3.4 48.4 1.0
CHC A:CLA803 3.4 48.4 1.0
CBB B:CLA803 3.4 29.4 1.0
CHA A:CLA803 3.4 48.4 1.0
CHD A:CLA803 3.5 48.4 1.0
CAB B:CLA803 4.0 29.4 1.0
C2B A:CLA803 4.1 48.4 1.0
C3B A:CLA803 4.2 48.4 1.0
C3D A:CLA803 4.2 48.4 1.0
CB B:ALA659 4.3 24.6 1.0
C2D A:CLA803 4.3 48.4 1.0
C2C A:CLA803 4.3 48.4 1.0
C3C A:CLA803 4.3 48.4 1.0
C3A A:CLA803 4.4 48.4 1.0
C2A A:CLA803 4.4 48.4 1.0
C3 A:CLA801 4.8 48.4 1.0
OD1 A:ASN601 4.8 28.2 1.0
C2 A:CLA801 4.8 48.4 1.0
C20 A:CLA801 4.9 48.4 1.0
C3B B:CLA803 4.9 29.4 1.0
CBD A:CLA803 4.9 48.4 1.0
C5 A:CLA801 5.0 48.4 1.0

Magnesium binding site 4 out of 216 in 6ijj

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Magnesium binding site 4 out of 216 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg804

b:41.2
occ:1.00
MG A:CLA804 0.0 41.2 1.0
NB A:CLA804 2.0 41.2 1.0
ND A:CLA804 2.0 41.2 1.0
NC A:CLA804 2.1 41.2 1.0
NA A:CLA804 2.1 41.2 1.0
NE2 A:HIS53 2.3 31.5 1.0
C4D A:CLA804 2.9 41.2 1.0
C1B A:CLA804 3.0 41.2 1.0
C4A A:CLA804 3.0 41.2 1.0
C1C A:CLA804 3.1 41.2 1.0
C4B A:CLA804 3.1 41.2 1.0
C4C A:CLA804 3.1 41.2 1.0
CE1 A:HIS53 3.1 31.5 1.0
C1A A:CLA804 3.1 41.2 1.0
C1D A:CLA804 3.1 41.2 1.0
CD2 A:HIS53 3.3 31.5 1.0
CHB A:CLA804 3.4 41.2 1.0
CHC A:CLA804 3.4 41.2 1.0
CHA A:CLA804 3.5 41.2 1.0
CG J:PRO12 3.5 43.9 1.0
CHD A:CLA804 3.5 41.2 1.0
CB J:PRO12 3.7 43.9 1.0
C3D A:CLA804 4.2 41.2 1.0
C2B A:CLA804 4.3 41.2 1.0
ND1 A:HIS53 4.3 31.5 1.0
C3B A:CLA804 4.3 41.2 1.0
C2C A:CLA804 4.3 41.2 1.0
CD J:PRO12 4.3 43.9 1.0
C2D A:CLA804 4.3 41.2 1.0
C3C A:CLA804 4.4 41.2 1.0
C3A A:CLA804 4.4 41.2 1.0
CG A:HIS53 4.4 31.5 1.0
C2A A:CLA804 4.4 41.2 1.0
C39 A:BCR856 4.8 48.8 1.0
C29 A:BCR856 4.8 48.8 1.0
CBD A:CLA804 4.9 41.2 1.0

Magnesium binding site 5 out of 216 in 6ijj

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Magnesium binding site 5 out of 216 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg805

b:37.2
occ:1.00
MG A:CLA805 0.0 37.2 1.0
NB A:CLA805 2.0 37.2 1.0
ND A:CLA805 2.0 37.2 1.0
NC A:CLA805 2.1 37.2 1.0
NA A:CLA805 2.1 37.2 1.0
NE2 A:HIS57 2.3 29.2 1.0
C4D A:CLA805 2.9 37.2 1.0
C1B A:CLA805 3.0 37.2 1.0
C4A A:CLA805 3.0 37.2 1.0
C4B A:CLA805 3.0 37.2 1.0
C1C A:CLA805 3.1 37.2 1.0
CE1 A:HIS57 3.1 29.2 1.0
C4C A:CLA805 3.1 37.2 1.0
C1D A:CLA805 3.1 37.2 1.0
C1A A:CLA805 3.1 37.2 1.0
CHB A:CLA805 3.4 37.2 1.0
CD2 A:HIS57 3.4 29.2 1.0
CHC A:CLA805 3.4 37.2 1.0
CHA A:CLA805 3.4 37.2 1.0
CHD A:CLA805 3.5 37.2 1.0
C7 A:CLA812 3.7 38.4 1.0
C3D A:CLA805 4.2 37.2 1.0
C2B A:CLA805 4.3 37.2 1.0
C3B A:CLA805 4.3 37.2 1.0
ND1 A:HIS57 4.3 29.2 1.0
C2C A:CLA805 4.3 37.2 1.0
C5 A:CLA812 4.3 38.4 1.0
C2D A:CLA805 4.3 37.2 1.0
C3C A:CLA805 4.3 37.2 1.0
C3A A:CLA805 4.4 37.2 1.0
C6 A:CLA812 4.4 38.4 1.0
C2A A:CLA805 4.5 37.2 1.0
CG A:HIS57 4.5 29.2 1.0
C8 A:CLA812 4.9 38.4 1.0
CBD A:CLA805 4.9 37.2 1.0
CBB A:CLA806 4.9 29.5 1.0

Magnesium binding site 6 out of 216 in 6ijj

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Magnesium binding site 6 out of 216 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg806

b:29.5
occ:1.00
MG A:CLA806 0.0 29.5 1.0
NB A:CLA806 2.0 29.5 1.0
ND A:CLA806 2.0 29.5 1.0
NA A:CLA806 2.1 29.5 1.0
NC A:CLA806 2.1 29.5 1.0
NE2 A:HIS77 2.2 25.7 1.0
C4D A:CLA806 2.9 29.5 1.0
CD2 A:HIS77 3.0 25.7 1.0
C1B A:CLA806 3.0 29.5 1.0
C4A A:CLA806 3.0 29.5 1.0
C1C A:CLA806 3.1 29.5 1.0
C4B A:CLA806 3.1 29.5 1.0
C1A A:CLA806 3.1 29.5 1.0
C4C A:CLA806 3.1 29.5 1.0
C1D A:CLA806 3.1 29.5 1.0
CE1 A:HIS77 3.3 25.7 1.0
CMB A:CLA831 3.3 32.0 1.0
CHB A:CLA806 3.4 29.5 1.0
CHA A:CLA806 3.4 29.5 1.0
CHC A:CLA806 3.4 29.5 1.0
CHD A:CLA806 3.5 29.5 1.0
CG A:HIS77 4.2 25.7 1.0
C3D A:CLA806 4.2 29.5 1.0
C2B A:CLA806 4.3 29.5 1.0
C2C A:CLA806 4.3 29.5 1.0
ND1 A:HIS77 4.3 25.7 1.0
C3B A:CLA806 4.3 29.5 1.0
C2D A:CLA806 4.3 29.5 1.0
C3C A:CLA806 4.3 29.5 1.0
C3A A:CLA806 4.4 29.5 1.0
C2A A:CLA806 4.4 29.5 1.0
C2B A:CLA831 4.7 32.0 1.0
CBB A:CLA831 4.8 32.0 1.0
CBD A:CLA806 4.9 29.5 1.0

Magnesium binding site 7 out of 216 in 6ijj

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Magnesium binding site 7 out of 216 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg807

b:48.4
occ:1.00
MG A:CLA807 0.0 48.4 1.0
NB A:CLA807 2.0 48.4 1.0
ND A:CLA807 2.0 48.4 1.0
NC A:CLA807 2.1 48.4 1.0
NA A:CLA807 2.1 48.4 1.0
OE1 A:GLN80 2.4 31.7 1.0
C4D A:CLA807 2.9 48.4 1.0
C1B A:CLA807 3.0 48.4 1.0
C4A A:CLA807 3.0 48.4 1.0
C4B A:CLA807 3.1 48.4 1.0
C1C A:CLA807 3.1 48.4 1.0
C4C A:CLA807 3.1 48.4 1.0
C1A A:CLA807 3.1 48.4 1.0
C1D A:CLA807 3.1 48.4 1.0
CD A:GLN80 3.2 31.7 1.0
CHB A:CLA807 3.4 48.4 1.0
CHC A:CLA807 3.4 48.4 1.0
CHA A:CLA807 3.4 48.4 1.0
C17 A:CLA807 3.5 48.4 1.0
NE2 A:GLN80 3.5 31.7 1.0
CHD A:CLA807 3.5 48.4 1.0
C3D A:CLA807 4.2 48.4 1.0
C2B A:CLA807 4.3 48.4 1.0
C3B A:CLA807 4.3 48.4 1.0
C15 A:CLA807 4.3 48.4 1.0
C2C A:CLA807 4.3 48.4 1.0
C2D A:CLA807 4.3 48.4 1.0
C3C A:CLA807 4.3 48.4 1.0
C3A A:CLA807 4.4 48.4 1.0
C16 A:CLA807 4.4 48.4 1.0
C2A A:CLA807 4.4 48.4 1.0
CG A:GLN80 4.5 31.7 1.0
C18 A:CLA807 4.5 48.4 1.0
C19 A:CLA807 4.6 48.4 1.0
CMA A:CLA806 4.7 29.5 1.0
C20 A:CLA807 4.7 48.4 1.0
CBD A:CLA807 4.9 48.4 1.0

Magnesium binding site 8 out of 216 in 6ijj

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Magnesium binding site 8 out of 216 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg808

b:43.7
occ:1.00
MG A:CLA808 0.0 43.7 1.0
NB A:CLA808 2.0 43.7 1.0
ND A:CLA808 2.0 43.7 1.0
NA A:CLA808 2.1 43.7 1.0
NC A:CLA808 2.1 43.7 1.0
NE2 A:HIS94 2.3 36.9 1.0
C4D A:CLA808 2.9 43.7 1.0
C1B A:CLA808 3.0 43.7 1.0
C4A A:CLA808 3.0 43.7 1.0
C4B A:CLA808 3.1 43.7 1.0
C1C A:CLA808 3.1 43.7 1.0
C4C A:CLA808 3.1 43.7 1.0
C1A A:CLA808 3.1 43.7 1.0
CE1 A:HIS94 3.1 36.9 1.0
C1D A:CLA808 3.1 43.7 1.0
CHB A:CLA808 3.4 43.7 1.0
CD2 A:HIS94 3.4 36.9 1.0
CHC A:CLA808 3.4 43.7 1.0
CHA A:CLA808 3.5 43.7 1.0
CHD A:CLA808 3.5 43.7 1.0
C5 A:LMU858 3.8 56.0 1.0
C4 A:LMU858 4.2 56.0 1.0
C3D A:CLA808 4.2 43.7 1.0
C6 A:LMU858 4.3 56.0 1.0
C3 A:LMU858 4.3 56.0 1.0
C2B A:CLA808 4.3 43.7 1.0
C3B A:CLA808 4.3 43.7 1.0
ND1 A:HIS94 4.3 36.9 1.0
C2C A:CLA808 4.3 43.7 1.0
C2D A:CLA808 4.4 43.7 1.0
C3C A:CLA808 4.4 43.7 1.0
C3A A:CLA808 4.4 43.7 1.0
C2A A:CLA808 4.4 43.7 1.0
CG A:HIS94 4.5 36.9 1.0
CBD A:CLA808 4.9 43.7 1.0
CBA A:CLA808 5.0 43.7 1.0
C7 A:LMU858 5.0 56.0 1.0

Magnesium binding site 9 out of 216 in 6ijj

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Magnesium binding site 9 out of 216 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg809

b:36.9
occ:1.00
MG A:CLA809 0.0 36.9 1.0
NB A:CLA809 2.0 36.9 1.0
ND A:CLA809 2.0 36.9 1.0
NA A:CLA809 2.1 36.9 1.0
NC A:CLA809 2.1 36.9 1.0
OE1 A:GLN116 2.3 35.1 1.0
C4D A:CLA809 2.9 36.9 1.0
C1B A:CLA809 3.0 36.9 1.0
C4A A:CLA809 3.0 36.9 1.0
C4B A:CLA809 3.0 36.9 1.0
C1C A:CLA809 3.1 36.9 1.0
C4C A:CLA809 3.1 36.9 1.0
C1A A:CLA809 3.1 36.9 1.0
C1D A:CLA809 3.1 36.9 1.0
CD A:GLN116 3.2 35.1 1.0
CHB A:CLA809 3.4 36.9 1.0
CHC A:CLA809 3.4 36.9 1.0
NE2 A:GLN116 3.4 35.1 1.0
CHA A:CLA809 3.5 36.9 1.0
CHD A:CLA809 3.5 36.9 1.0
C4 A:CLA829 4.0 31.9 1.0
C3D A:CLA809 4.2 36.9 1.0
C2B A:CLA809 4.3 36.9 1.0
C3B A:CLA809 4.3 36.9 1.0
C5 A:CLA829 4.3 31.9 1.0
C2C A:CLA809 4.3 36.9 1.0
C2D A:CLA809 4.3 36.9 1.0
C3C A:CLA809 4.3 36.9 1.0
C3 A:CLA829 4.3 31.9 1.0
C3A A:CLA809 4.4 36.9 1.0
C2A A:CLA809 4.4 36.9 1.0
O1A A:CLA829 4.6 31.9 1.0
CG A:GLN116 4.6 35.1 1.0
CBA A:CLA809 4.9 36.9 1.0
C6 A:CLA829 4.9 31.9 1.0
CBD A:CLA809 4.9 36.9 1.0

Magnesium binding site 10 out of 216 in 6ijj

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Magnesium binding site 10 out of 216 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg810

b:41.1
occ:1.00
MG A:CLA810 0.0 41.1 1.0
NB A:CLA810 2.0 41.1 1.0
ND A:CLA810 2.0 41.1 1.0
NC A:CLA810 2.1 41.1 1.0
NA A:CLA810 2.1 41.1 1.0
OE1 A:GLN124 2.3 41.0 1.0
C4D A:CLA810 2.9 41.1 1.0
C1B A:CLA810 3.0 41.1 1.0
C4A A:CLA810 3.0 41.1 1.0
C4B A:CLA810 3.1 41.1 1.0
C1C A:CLA810 3.1 41.1 1.0
C1D A:CLA810 3.1 41.1 1.0
C4C A:CLA810 3.1 41.1 1.0
C1A A:CLA810 3.2 41.1 1.0
CD A:GLN124 3.3 41.0 1.0
CHB A:CLA810 3.4 41.1 1.0
CHC A:CLA810 3.4 41.1 1.0
CHA A:CLA810 3.5 41.1 1.0
CHD A:CLA810 3.5 41.1 1.0
NE2 A:GLN124 3.8 41.0 1.0
C17 A:CLA829 3.9 31.9 1.0
C3D A:CLA810 4.2 41.1 1.0
C2B A:CLA810 4.3 41.1 1.0
C3B A:CLA810 4.3 41.1 1.0
C15 A:CLA829 4.3 31.9 1.0
C2D A:CLA810 4.3 41.1 1.0
C2C A:CLA810 4.3 41.1 1.0
C3C A:CLA810 4.4 41.1 1.0
C3A A:CLA810 4.4 41.1 1.0
C2A A:CLA810 4.5 41.1 1.0
CG A:GLN124 4.7 41.0 1.0
C16 A:CLA829 4.7 31.9 1.0
C13 A:CLA829 4.9 31.9 1.0
CB A:GLN124 4.9 41.0 1.0
CBD A:CLA810 4.9 41.1 1.0

Reference:

X.Su, J.Ma, X.Pan, X.Zhao, W.Chang, Z.Liu, X.Zhang, M.Li. Antenna Arrangement and Energy Transfer Pathways of A Green Algal Photosystem-I-Lhci Supercomplex. Nat Plants V. 5 273 2019.
ISSN: ESSN 2055-0278
PubMed: 30850819
DOI: 10.1038/S41477-019-0380-5
Page generated: Tue Oct 1 03:48:13 2024

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