Magnesium in PDB 6itc: Structure of A Substrate Engaged Seca-Secy Protein Translocation Machine

The structure of Structure of A Substrate Engaged Seca-Secy Protein Translocation Machine also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Magnesium atom in the Structure of A Substrate Engaged Seca-Secy Protein Translocation Machine (pdb code 6itc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of A Substrate Engaged Seca-Secy Protein Translocation Machine, PDB code: 6itc:

Magnesium binding site 1 out of 1 in the Structure of A Substrate Engaged Seca-Secy Protein Translocation Machine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Substrate Engaged Seca-Secy Protein Translocation Machine within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:49.5 occ:1.00 O2B A:ADP1003 2.5 47.1 1.0 F3 A:BEF1002 3.6 49.4 1.0 OG1 A:THR107 3.7 36.5 1.0 OE2 A:GLU208 3.8 37.2 1.0 PB A:ADP1003 3.9 47.1 1.0 O2A A:ADP1003 4.0 47.1 1.0 CD1 A:LEU133 4.3 36.1 1.0 NH2 A:ARG136 4.4 38.4 1.0 O3B A:ADP1003 4.4 47.1 1.0 O A:GLY490 4.5 39.2 1.0 BE A:BEF1002 4.6 49.4 1.0 CA A:GLY490 4.6 39.2 1.0 O3A A:ADP1003 4.7 47.1 1.0 PA A:ADP1003 4.7 47.1 1.0 O1A A:ADP1003 4.9 47.1 1.0 CD A:GLU208 4.9 37.2 1.0 O1B A:ADP1003 5.0 47.1 1.0

C.Ma, X.Wu, D.Sun, E.Park, M.A.Catipovic, T.A.Rapoport, N.Gao, L.Li. Structure of the Substrate-Engaged Seca-Secy Protein Translocation Machine. Nat Commun V. 10 2872 2019.
ISSN: ESSN 2041-1723
PubMed: 31253804
DOI: 10.1038/S41467-019-10918-2