Magnesium in PDB 6iug: Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen

The binding sites of Magnesium atom in the Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen (pdb code 6iug). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen, PDB code: 6iug:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:0.1 occ:1.00 O1B A:ADP401 2.1 0.2 1.0 O1A A:ADP401 2.2 0.2 1.0 PB A:ADP401 2.4 0.2 1.0 O2B A:ADP401 2.5 0.2 1.0 O3A A:ADP401 2.5 0.2 1.0 NZ A:LYS20 2.8 0.8 1.0 PA A:ADP401 2.9 0.2 1.0 O2A A:ADP401 3.9 0.2 1.0 O3B A:ADP401 3.9 0.2 1.0 OD2 A:ASP13 4.0 0.6 1.0 O5' A:ADP401 4.1 0.2 1.0 CE A:LYS20 4.2 0.8 1.0 O A:MET18 4.4 0.4 1.0 O A:LYS338 4.4 0.0 1.0 CA A:GLY15 4.6 0.9 1.0 CD A:LYS20 4.7 0.8 1.0 CG A:MET18 4.7 0.4 1.0 CG A:ASP13 4.8 0.6 1.0

Magnesium binding site 2 out of 5 in the Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:0.9 occ:1.00 O1B B:ADP401 2.1 0.2 1.0 O1A B:ADP401 2.2 0.2 1.0 PB B:ADP401 2.4 0.2 1.0 O2B B:ADP401 2.5 0.2 1.0 O3A B:ADP401 2.5 0.2 1.0 NZ B:LYS20 2.8 0.2 1.0 PA B:ADP401 2.9 0.2 1.0 O2A B:ADP401 3.9 0.2 1.0 O3B B:ADP401 3.9 0.2 1.0 OD2 B:ASP13 4.0 0.3 1.0 O5' B:ADP401 4.1 0.2 1.0 CE B:LYS20 4.2 0.2 1.0 O B:MET18 4.4 0.4 1.0 O B:LYS338 4.4 0.5 1.0 CA B:GLY15 4.6 0.5 1.0 CD B:LYS20 4.7 0.2 1.0 CG B:MET18 4.7 0.4 1.0 CG B:ASP13 4.8 0.3 1.0

Magnesium binding site 3 out of 5 in the Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:0.9 occ:1.00 O1B C:ADP401 2.1 0.7 1.0 O1A C:ADP401 2.2 0.7 1.0 PB C:ADP401 2.4 0.7 1.0 O2B C:ADP401 2.5 0.7 1.0 O3A C:ADP401 2.5 0.7 1.0 NZ C:LYS20 2.8 0.2 1.0 PA C:ADP401 2.9 0.7 1.0 O2A C:ADP401 3.9 0.7 1.0 O3B C:ADP401 3.9 0.7 1.0 OD2 C:ASP13 4.0 0.3 1.0 O5' C:ADP401 4.1 0.7 1.0 CE C:LYS20 4.2 0.2 1.0 O C:MET18 4.4 0.5 1.0 O C:LYS338 4.4 0.3 1.0 CA C:GLY15 4.6 0.6 1.0 CD C:LYS20 4.7 0.2 1.0 CG C:MET18 4.7 0.5 1.0 CG C:ASP13 4.8 0.3 1.0

Magnesium binding site 4 out of 5 in the Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:0.7 occ:1.00 O1B D:ADP401 2.1 0.4 1.0 O1A D:ADP401 2.2 0.4 1.0 PB D:ADP401 2.4 0.4 1.0 O2B D:ADP401 2.5 0.4 1.0 O3A D:ADP401 2.5 0.4 1.0 NZ D:LYS20 2.8 0.1 1.0 PA D:ADP401 2.9 0.4 1.0 O2A D:ADP401 3.9 0.4 1.0 O3B D:ADP401 3.9 0.4 1.0 OD2 D:ASP13 4.0 0.0 1.0 O5' D:ADP401 4.1 0.4 1.0 CE D:LYS20 4.2 0.1 1.0 O D:MET18 4.4 0.8 1.0 O D:LYS338 4.4 0.3 1.0 CA D:GLY15 4.6 0.3 1.0 CD D:LYS20 4.7 0.1 1.0 CG D:MET18 4.7 0.8 1.0 CG D:ASP13 4.8 0.0 1.0

Magnesium binding site 5 out of 5 in the Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of the Plant Actin Filaments From Zea Mays Pollen within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:0.5 occ:1.00 O1B E:ADP401 2.1 0.6 1.0 O1A E:ADP401 2.2 0.6 1.0 PB E:ADP401 2.4 0.6 1.0 O2B E:ADP401 2.5 0.6 1.0 O3A E:ADP401 2.5 0.6 1.0 NZ E:LYS20 2.8 0.3 1.0 PA E:ADP401 2.9 0.6 1.0 O2A E:ADP401 3.9 0.6 1.0 O3B E:ADP401 3.9 0.6 1.0 OD2 E:ASP13 4.0 0.3 1.0 O5' E:ADP401 4.1 0.6 1.0 CE E:LYS20 4.2 0.3 1.0 O E:MET18 4.4 0.4 1.0 O E:LYS338 4.4 0.9 1.0 CA E:GLY15 4.6 0.7 1.0 CD E:LYS20 4.7 0.3 1.0 CG E:MET18 4.7 0.4 1.0 CG E:ASP13 4.8 0.3 1.0

Z.Ren, Y.Zhang, Y.Zhang, Y.He, P.Du, Z.Wang, F.Sun, H.Ren. Cryo-Em Structure of Actin Filaments From Zea Mays Pollen. Plant Cell 2019.
ISSN: ESSN 1532-298X
PubMed: 31628168
DOI: 10.1105/TPC.18.00973