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Magnesium in PDB 6ixt: Crystal Structure of Isocitrate Dehydrogenase From Ostreococcus Tauri in Complex with Nad+ and MG2+

Protein crystallography data

The structure of Crystal Structure of Isocitrate Dehydrogenase From Ostreococcus Tauri in Complex with Nad+ and MG2+, PDB code: 6ixt was solved by G.P.Zhu, W.G.Tang, P.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.78
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 66.392, 79.178, 112.097, 90.27, 102.33, 112.52
R / Rfree (%) 19 / 21.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Isocitrate Dehydrogenase From Ostreococcus Tauri in Complex with Nad+ and MG2+ (pdb code 6ixt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Isocitrate Dehydrogenase From Ostreococcus Tauri in Complex with Nad+ and MG2+, PDB code: 6ixt:

Magnesium binding site 1 out of 1 in 6ixt

Go back to Magnesium Binding Sites List in 6ixt
Magnesium binding site 1 out of 1 in the Crystal Structure of Isocitrate Dehydrogenase From Ostreococcus Tauri in Complex with Nad+ and MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Isocitrate Dehydrogenase From Ostreococcus Tauri in Complex with Nad+ and MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:27.7
occ:1.00
O B:HOH747 1.9 20.0 1.0
O A:HOH710 2.1 15.4 1.0
OD1 A:ASP302 2.1 11.8 1.0
OD2 B:ASP278 2.1 15.8 1.0
OD2 A:ASP306 2.2 12.2 1.0
O A:ASP302 2.6 9.3 1.0
CG A:ASP306 3.1 10.7 1.0
CG A:ASP302 3.2 10.8 1.0
CG B:ASP278 3.2 14.8 1.0
C A:ASP302 3.4 9.2 1.0
OD1 A:ASP306 3.5 10.8 1.0
CB B:ASP278 3.6 13.7 1.0
CA A:ASP302 3.9 9.2 1.0
OD2 A:ASP302 4.0 11.0 1.0
CB A:ASP302 4.0 9.9 1.0
O A:HOH892 4.2 35.1 1.0
O A:HOH829 4.2 38.0 1.0
OD1 B:ASP278 4.3 15.5 1.0
CB A:ASP306 4.3 9.4 1.0
O B:HOH831 4.4 32.7 1.0
N A:VAL303 4.4 8.9 1.0
O A:HOH796 4.5 10.6 1.0
CA B:ASP278 4.7 12.4 1.0
NZ B:LYS234 4.8 10.2 1.0
CA A:VAL303 4.8 8.8 1.0
OG1 A:THR305 5.0 8.0 1.0

Reference:

G.P.Zhu, W.G.Tang, P.Wang. Crystal Structure of Isocitrate Dehydrogenase From Ostreococcus Tauri in Complex with Nad+ and MG2+ To Be Published.
Page generated: Tue Oct 1 04:30:38 2024

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