Magnesium in PDB 6izh: Crystal Structure of Deaminase Amne From Pseudomonas Sp. Ap-3

All present enzymatic activity of Crystal Structure of Deaminase Amne From Pseudomonas Sp. Ap-3:
3.5.99.5;

The structure of Crystal Structure of Deaminase Amne From Pseudomonas Sp. Ap-3, PDB code: 6izh was solved by Y.J.Chen, Y.P.Chen, D.Su, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.51 / 1.75
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	170.871, 54.781, 134.594, 90.00, 101.89, 90.00
R / Rfree (%)	15.7 / 19.5

The binding sites of Magnesium atom in the Crystal Structure of Deaminase Amne From Pseudomonas Sp. Ap-3 (pdb code 6izh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Deaminase Amne From Pseudomonas Sp. Ap-3, PDB code: 6izh:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Deaminase Amne From Pseudomonas Sp. Ap-3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Deaminase Amne From Pseudomonas Sp. Ap-3 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg201 b:18.8 occ:0.50 OD1 C:ASP74 2.1 17.1 1.0 O C:HOH322 2.1 19.3 1.0 O C:HOH359 2.2 19.9 1.0 CG C:ASP74 3.1 22.4 1.0 OD2 C:ASP74 3.4 24.9 1.0 OE1 C:GLN77 4.2 19.3 1.0 O C:HOH390 4.2 28.9 1.0 O C:SER70 4.3 20.0 1.0 CB C:ASP74 4.4 18.8 1.0 O C:HOH422 4.6 33.7 1.0 CA C:ASP74 4.8 16.9 1.0 N C:ASP74 4.9 15.9 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Deaminase Amne From Pseudomonas Sp. Ap-3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Deaminase Amne From Pseudomonas Sp. Ap-3 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg201 b:25.4 occ:1.00 O E:HOH430 2.0 25.6 1.0 O E:HOH342 2.1 21.4 1.0 O E:HOH431 2.2 23.2 1.0 O E:HOH366 2.2 22.8 1.0 O E:HOH441 2.2 31.7 1.0 O E:HOH354 3.9 24.3 1.0 O E:HOH417 4.1 42.3 1.0 O E:HOH323 4.1 39.1 1.0 O E:HOH357 4.1 26.2 1.0 OE2 E:GLU67 4.2 20.4 1.0 OE1 E:GLU67 4.2 22.4 1.0 O E:HOH341 4.2 25.5 1.0 O E:HOH396 4.6 22.1 1.0 CD E:GLU67 4.7 21.8 1.0

Y.Chen, Y.Chen, H.Jiang, D.Lu, T.Hu, G.Bi, Y.Ran, B.Yu, H.Dong, D.Su. A Unique Homo-Hexameric Structure of 2-Aminomuconate Deaminase in the Bacteriumpseudomonas Species Ap-3. Front Microbiol V. 10 2079 2019.
ISSN: ESSN 1664-302X
PubMed: 31555255
DOI: 10.3389/FMICB.2019.02079