Magnesium in PDB 6izv: Averaged Strand Structure of A 15-Stranded Parm Filament From Clostridium Botulinum

The binding sites of Magnesium atom in the Averaged Strand Structure of A 15-Stranded Parm Filament From Clostridium Botulinum (pdb code 6izv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Averaged Strand Structure of A 15-Stranded Parm Filament From Clostridium Botulinum, PDB code: 6izv:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Averaged Strand Structure of A 15-Stranded Parm Filament From Clostridium Botulinum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Averaged Strand Structure of A 15-Stranded Parm Filament From Clostridium Botulinum within 5.0Å range: probe atom residue distance (Å) B Occ 0:Mg402 b:0.5 occ:1.00 NE2 0:GLN168 2.2 0.5 1.0 O2B 0:ADP401 2.3 0.4 1.0 OD2 0:ASP195 3.0 0.3 1.0 ND2 0:ASN338 3.1 0.2 1.0 PB 0:ADP401 3.3 0.4 1.0 CD 0:GLN168 3.4 0.5 1.0 O3A 0:ADP401 3.5 0.4 1.0 O1B 0:ADP401 3.7 0.4 1.0 CG 0:ASP195 3.9 0.3 1.0 CG 0:GLN168 4.0 0.5 1.0 NZ 0:LYS16 4.1 0.3 1.0 OD1 0:ASP195 4.1 0.3 1.0 OD2 0:ASP9 4.3 0.8 1.0 OE1 0:GLN168 4.3 0.5 1.0 CG 0:ASN338 4.3 0.2 1.0 OD1 0:ASP9 4.5 0.8 1.0 O1A 0:ADP401 4.6 0.4 1.0 CE 0:LYS16 4.6 0.3 1.0 PA 0:ADP401 4.7 0.4 1.0 O3B 0:ADP401 4.7 0.4 1.0 CG 0:ASP9 4.8 0.8 1.0 CA 0:GLY197 4.8 0.0 1.0 OD2 0:ASP202 4.8 0.8 1.0

Magnesium binding site 2 out of 2 in the Averaged Strand Structure of A 15-Stranded Parm Filament From Clostridium Botulinum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Averaged Strand Structure of A 15-Stranded Parm Filament From Clostridium Botulinum within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg402 b:97.6 occ:1.00 NE2 1:GLN168 2.2 0.6 1.0 O1B 1:ADP401 2.3 0.1 1.0 OD2 1:ASP195 3.0 0.4 1.0 ND2 1:ASN338 3.1 0.7 1.0 PB 1:ADP401 3.3 0.1 1.0 CD 1:GLN168 3.4 0.6 1.0 O3A 1:ADP401 3.5 0.1 1.0 O3B 1:ADP401 3.7 0.1 1.0 CG 1:ASP195 3.9 0.4 1.0 CG 1:GLN168 4.0 0.6 1.0 NZ 1:LYS16 4.1 0.9 1.0 OD1 1:ASP195 4.1 0.4 1.0 OD2 1:ASP9 4.3 0.5 1.0 OE1 1:GLN168 4.3 0.6 1.0 CG 1:ASN338 4.3 0.7 1.0 OD1 1:ASP9 4.5 0.5 1.0 O1A 1:ADP401 4.6 0.1 1.0 CE 1:LYS16 4.6 0.9 1.0 PA 1:ADP401 4.7 0.1 1.0 O2B 1:ADP401 4.7 0.1 1.0 CG 1:ASP9 4.8 0.5 1.0 CA 1:GLY197 4.8 0.1 1.0 OD2 1:ASP202 4.8 0.2 1.0

F.Koh, A.Narita, L.J.Lee, K.Tanaka, Y.Z.Tan, V.P.Dandey, D.Popp, R.C.Robinson. The Structure of A 15-Stranded Actin-Like Filament From Clostridium Botulinum. Nat Commun V. 10 2856 2019.
ISSN: ESSN 2041-1723
PubMed: 31253774
DOI: 10.1038/S41467-019-10779-9