Magnesium in PDB 6j4w: Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-5) of the Nucleosome

Enzymatic activity of Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-5) of the Nucleosome

All present enzymatic activity of Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-5) of the Nucleosome:
2.7.7.6;

Other elements in 6j4w:

The structure of Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-5) of the Nucleosome also contains other interesting chemical elements:

Zinc (Zn) 10 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-5) of the Nucleosome (pdb code 6j4w). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-5) of the Nucleosome, PDB code: 6j4w:

Magnesium binding site 1 out of 1 in 6j4w

Go back to Magnesium Binding Sites List in 6j4w
Magnesium binding site 1 out of 1 in the Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-5) of the Nucleosome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-5) of the Nucleosome within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1803

b:36.8
occ:1.00
OD1 A:ASP484 2.1 31.6 1.0
O3' P:C10 2.2 64.4 1.0
OD1 A:ASP482 2.5 32.2 1.0
OD1 A:ASP486 2.5 32.0 1.0
CG A:ASP484 3.0 31.6 1.0
OD2 A:ASP484 3.1 31.6 1.0
CG A:ASP486 3.1 32.0 1.0
OD2 A:ASP486 3.1 32.0 1.0
C3' P:C10 3.3 64.4 1.0
O2' P:C10 3.4 64.4 1.0
CG A:ASP482 3.5 32.2 1.0
C4' P:C10 3.6 64.4 1.0
OD2 A:ASP482 3.8 32.2 1.0
C2' P:C10 4.0 64.4 1.0
C5' P:C10 4.3 64.4 1.0
CB A:ASP486 4.4 32.0 1.0
CB A:ASP484 4.4 31.6 1.0
N A:ASP486 4.6 32.0 1.0
N A:ASP484 4.8 31.6 1.0
O4' P:C10 4.8 64.4 1.0
CB A:ASP482 4.9 32.2 1.0
N A:ASP482 4.9 32.2 1.0
CA A:ASP486 4.9 32.0 1.0
O A:ASP482 4.9 32.2 1.0
CA A:ASP484 5.0 31.6 1.0
C A:ASP484 5.0 31.6 1.0

Reference:

H.Ehara, T.Kujirai, Y.Fujino, M.Shirouzu, H.Kurumizaka, S.I.Sekine. Structural Insight Into Nucleosome Transcription By Rna Polymerase II with Elongation Factors. Science V. 363 744 2019.
ISSN: ESSN 1095-9203
PubMed: 30733384
DOI: 10.1126/SCIENCE.AAV8912
Page generated: Mon Dec 14 22:59:37 2020

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