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Magnesium in PDB 6j6x: Crystal Structure of Apo Ggtaseiii

Enzymatic activity of Crystal Structure of Apo Ggtaseiii

All present enzymatic activity of Crystal Structure of Apo Ggtaseiii:
2.5.1.60;

Protein crystallography data

The structure of Crystal Structure of Apo Ggtaseiii, PDB code: 6j6x was solved by S.Goto-Ito, A.Yamagata, Y.Sato, S.Fukai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.48 / 2.96
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 88.540, 88.540, 647.581, 90.00, 90.00, 120.00
R / Rfree (%) 26.6 / 29.8

Other elements in 6j6x:

The structure of Crystal Structure of Apo Ggtaseiii also contains other interesting chemical elements:

Arsenic (As) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Apo Ggtaseiii (pdb code 6j6x). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Apo Ggtaseiii, PDB code: 6j6x:

Magnesium binding site 1 out of 1 in 6j6x

Go back to Magnesium Binding Sites List in 6j6x
Magnesium binding site 1 out of 1 in the Crystal Structure of Apo Ggtaseiii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Apo Ggtaseiii within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:67.2
occ:1.00
OE2 B:GLU318 3.0 82.0 1.0
OD1 B:ASP109 3.4 91.8 1.0
CA B:VAL319 3.6 79.8 1.0
CG1 B:VAL319 3.6 71.9 1.0
CD B:GLU318 3.8 83.2 1.0
CB B:VAL319 3.9 73.5 1.0
OE1 B:GLU318 4.0 80.2 1.0
CG2 B:VAL319 4.0 75.6 1.0
CG B:ASP109 4.2 87.9 1.0
OD2 B:ASP109 4.3 84.6 1.0
N B:VAL319 4.3 80.6 1.0
O B:LEU107 4.4 85.3 1.0
O B:GLU318 4.4 78.1 1.0
O B:VAL319 4.4 81.1 1.0
C B:VAL319 4.5 84.0 1.0
C B:GLU318 4.6 78.8 1.0
O B:THR106 5.0 73.8 1.0

Reference:

S.Goto-Ito, R.Shirakawa, S.Fukai. Crystal Structure of Apo Ggtaseiii To Be Published.
Page generated: Tue Oct 1 04:38:22 2024

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