Magnesium in PDB 6jcz: Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5
Enzymatic activity of Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5
All present enzymatic activity of Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5:
1.1.1.86;
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Magnesium atom in the Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5
(pdb code 6jcz). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 24 binding sites of Magnesium where determined in the
Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5, PDB code: 6jcz:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 24 in 6jcz
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Magnesium Binding Sites List in 6jcz
Magnesium binding site 1 out
of 24 in the Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg401
b:75.5
occ:1.00
|
O09
|
A:9TY404
|
2.0
|
79.0
|
1.0
|
OE1
|
A:GLU195
|
2.0
|
70.6
|
1.0
|
O05
|
A:9TY404
|
2.0
|
79.0
|
1.0
|
C04
|
A:9TY404
|
2.3
|
79.0
|
1.0
|
CD
|
A:GLU195
|
2.4
|
70.6
|
1.0
|
OE2
|
A:GLU195
|
2.5
|
70.6
|
1.0
|
C02
|
A:9TY404
|
2.6
|
79.0
|
1.0
|
C03
|
A:9TY404
|
2.8
|
79.0
|
1.0
|
O
|
A:ASP191
|
3.0
|
73.7
|
1.0
|
O06
|
A:9TY404
|
3.0
|
79.0
|
1.0
|
OD2
|
A:ASP191
|
3.3
|
73.7
|
1.0
|
OG
|
B:SER257
|
3.4
|
70.4
|
1.0
|
CG
|
A:GLU195
|
3.7
|
70.6
|
1.0
|
O01
|
A:9TY404
|
3.7
|
79.0
|
1.0
|
HG
|
B:SER257
|
3.7
|
70.4
|
1.0
|
HG3
|
A:GLU195
|
3.8
|
70.6
|
1.0
|
CG
|
A:ASP191
|
4.0
|
73.7
|
1.0
|
HG22
|
B:THR256
|
4.1
|
69.8
|
1.0
|
HA
|
B:SER257
|
4.1
|
70.4
|
1.0
|
HB2
|
A:GLU195
|
4.1
|
70.6
|
1.0
|
C07
|
A:9TY404
|
4.2
|
79.0
|
1.0
|
C
|
A:ASP191
|
4.2
|
73.7
|
1.0
|
HD23
|
A:LEU192
|
4.2
|
69.3
|
1.0
|
C08
|
A:9TY404
|
4.2
|
79.0
|
1.0
|
OD1
|
A:ASP191
|
4.4
|
73.7
|
1.0
|
HA
|
A:LEU192
|
4.4
|
69.3
|
1.0
|
HG2
|
A:GLU195
|
4.4
|
70.6
|
1.0
|
CB
|
B:SER257
|
4.5
|
70.4
|
1.0
|
CB
|
A:GLU195
|
4.5
|
70.6
|
1.0
|
H1
|
A:9TY404
|
4.5
|
79.0
|
1.0
|
H3
|
A:9TY404
|
4.6
|
79.0
|
1.0
|
H2
|
A:9TY404
|
4.6
|
79.0
|
1.0
|
HB3
|
B:SER257
|
4.7
|
70.4
|
1.0
|
CA
|
B:SER257
|
4.7
|
70.4
|
1.0
|
HD21
|
A:LEU192
|
4.7
|
69.3
|
1.0
|
H4
|
A:9TY404
|
4.7
|
79.0
|
1.0
|
HB3
|
A:GLU195
|
4.8
|
70.6
|
1.0
|
CD2
|
A:LEU192
|
4.9
|
69.3
|
1.0
|
N
|
B:SER257
|
5.0
|
70.4
|
1.0
|
CB
|
A:ASP191
|
5.0
|
73.7
|
1.0
|
|
Magnesium binding site 2 out
of 24 in 6jcz
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Magnesium Binding Sites List in 6jcz
Magnesium binding site 2 out
of 24 in the Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg402
b:72.6
occ:1.00
|
HG
|
A:SER194
|
2.3
|
70.8
|
1.0
|
OE2
|
B:GLU227
|
2.7
|
78.3
|
1.0
|
O01
|
A:9TY404
|
2.8
|
79.0
|
1.0
|
OG
|
A:SER194
|
3.0
|
70.8
|
1.0
|
HB2
|
A:SER194
|
3.6
|
70.8
|
1.0
|
HG3
|
A:GLU195
|
3.7
|
70.6
|
1.0
|
C02
|
A:9TY404
|
3.7
|
79.0
|
1.0
|
O09
|
A:9TY404
|
3.7
|
79.0
|
1.0
|
CB
|
A:SER194
|
3.8
|
70.8
|
1.0
|
CD
|
B:GLU227
|
3.9
|
78.3
|
1.0
|
HB3
|
A:SER194
|
4.2
|
70.8
|
1.0
|
OE1
|
B:GLU227
|
4.4
|
78.3
|
1.0
|
CG
|
A:GLU195
|
4.5
|
70.6
|
1.0
|
OE2
|
A:GLU195
|
4.6
|
70.6
|
1.0
|
OE1
|
B:GLU233
|
4.6
|
85.4
|
1.0
|
HA
|
A:ASP191
|
4.6
|
73.7
|
1.0
|
HG2
|
A:GLU195
|
4.6
|
70.6
|
1.0
|
HZ2
|
A:TRP198
|
4.7
|
70.2
|
1.0
|
O
|
B:GLU227
|
4.7
|
78.3
|
1.0
|
HG2
|
B:GLU233
|
4.8
|
85.4
|
1.0
|
OD1
|
A:ASP191
|
4.8
|
73.7
|
1.0
|
CD
|
B:GLU233
|
4.8
|
85.4
|
1.0
|
CD
|
A:GLU195
|
4.9
|
70.6
|
1.0
|
HG3
|
B:GLU227
|
4.9
|
78.3
|
1.0
|
|
Magnesium binding site 3 out
of 24 in 6jcz
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Magnesium Binding Sites List in 6jcz
Magnesium binding site 3 out
of 24 in the Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg405
b:70.0
occ:1.00
|
HG
|
B:SER194
|
2.7
|
70.0
|
1.0
|
OE2
|
A:GLU227
|
3.0
|
78.0
|
1.0
|
OG
|
B:SER194
|
3.3
|
70.0
|
1.0
|
O09
|
B:9TY403
|
3.8
|
77.8
|
1.0
|
HG3
|
B:GLU195
|
3.8
|
69.2
|
1.0
|
HB2
|
B:SER194
|
3.9
|
70.0
|
1.0
|
CD
|
A:GLU227
|
4.2
|
78.0
|
1.0
|
CB
|
B:SER194
|
4.2
|
70.0
|
1.0
|
OE2
|
B:GLU195
|
4.3
|
69.2
|
1.0
|
OE1
|
A:GLU233
|
4.4
|
84.6
|
1.0
|
CD
|
B:GLU195
|
4.5
|
69.2
|
1.0
|
CG
|
B:GLU195
|
4.6
|
69.2
|
1.0
|
OE1
|
A:GLU227
|
4.6
|
78.0
|
1.0
|
HB3
|
B:SER194
|
4.6
|
70.0
|
1.0
|
MG
|
B:MG401
|
4.6
|
75.5
|
1.0
|
HG2
|
A:GLU233
|
4.6
|
84.6
|
1.0
|
CD
|
A:GLU233
|
4.7
|
84.6
|
1.0
|
OD1
|
B:ASP191
|
4.8
|
73.1
|
1.0
|
O
|
B:ASP191
|
4.9
|
73.1
|
1.0
|
HZ2
|
B:TRP198
|
4.9
|
69.9
|
1.0
|
O
|
A:GLU227
|
4.9
|
78.0
|
1.0
|
C02
|
B:9TY403
|
4.9
|
77.8
|
1.0
|
HG2
|
B:GLU195
|
4.9
|
69.2
|
1.0
|
HA
|
B:ASP191
|
5.0
|
73.1
|
1.0
|
HB2
|
A:GLU233
|
5.0
|
84.6
|
1.0
|
|
Magnesium binding site 4 out
of 24 in 6jcz
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Magnesium Binding Sites List in 6jcz
Magnesium binding site 4 out
of 24 in the Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg401
b:75.5
occ:1.00
|
O09
|
B:9TY403
|
2.0
|
77.8
|
1.0
|
O06
|
B:9TY403
|
2.0
|
77.8
|
1.0
|
OE1
|
B:GLU195
|
2.0
|
69.2
|
1.0
|
OE2
|
B:GLU195
|
2.1
|
69.2
|
1.0
|
CD
|
B:GLU195
|
2.3
|
69.2
|
1.0
|
C04
|
B:9TY403
|
2.4
|
77.8
|
1.0
|
C02
|
B:9TY403
|
2.5
|
77.8
|
1.0
|
OD1
|
B:ASP191
|
2.6
|
73.1
|
1.0
|
C03
|
B:9TY403
|
2.6
|
77.8
|
1.0
|
O
|
B:ASP191
|
3.1
|
73.1
|
1.0
|
CG
|
B:ASP191
|
3.1
|
73.1
|
1.0
|
OD2
|
B:ASP191
|
3.2
|
73.1
|
1.0
|
O05
|
B:9TY403
|
3.4
|
77.8
|
1.0
|
C07
|
B:9TY403
|
3.6
|
77.8
|
1.0
|
O01
|
B:9TY403
|
3.7
|
77.8
|
1.0
|
CG
|
B:GLU195
|
3.8
|
69.2
|
1.0
|
H1
|
B:9TY403
|
3.8
|
77.8
|
1.0
|
H2
|
B:9TY403
|
3.9
|
77.8
|
1.0
|
OG
|
A:SER257
|
4.0
|
68.8
|
1.0
|
HG3
|
B:GLU195
|
4.0
|
69.2
|
1.0
|
C
|
B:ASP191
|
4.1
|
73.1
|
1.0
|
C08
|
B:9TY403
|
4.2
|
77.8
|
1.0
|
HG2
|
B:GLU195
|
4.3
|
69.2
|
1.0
|
HB2
|
B:GLU195
|
4.4
|
69.2
|
1.0
|
CB
|
B:ASP191
|
4.4
|
73.1
|
1.0
|
HA
|
B:ASP191
|
4.5
|
73.1
|
1.0
|
HG
|
A:SER257
|
4.5
|
68.8
|
1.0
|
HA
|
B:LEU192
|
4.6
|
68.8
|
1.0
|
CA
|
B:ASP191
|
4.6
|
73.1
|
1.0
|
MG
|
A:MG405
|
4.6
|
70.0
|
1.0
|
H3
|
B:9TY403
|
4.6
|
77.8
|
1.0
|
CB
|
B:GLU195
|
4.7
|
69.2
|
1.0
|
H4
|
B:9TY403
|
4.7
|
77.8
|
1.0
|
HB3
|
A:SER257
|
4.8
|
68.8
|
1.0
|
HA
|
A:SER257
|
4.8
|
68.8
|
1.0
|
CB
|
A:SER257
|
4.9
|
68.8
|
1.0
|
HB3
|
B:ASP191
|
4.9
|
73.1
|
1.0
|
|
Magnesium binding site 5 out
of 24 in 6jcz
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Magnesium Binding Sites List in 6jcz
Magnesium binding site 5 out
of 24 in the Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg401
b:81.3
occ:1.00
|
O06
|
C:9TY403
|
2.0
|
79.8
|
1.0
|
OE2
|
C:GLU195
|
2.0
|
71.0
|
1.0
|
OD1
|
C:ASP191
|
2.0
|
74.9
|
1.0
|
C02
|
C:9TY403
|
2.3
|
79.8
|
1.0
|
C03
|
C:9TY403
|
2.4
|
79.8
|
1.0
|
C04
|
C:9TY403
|
2.5
|
79.8
|
1.0
|
CG
|
C:ASP191
|
2.5
|
74.9
|
1.0
|
O09
|
C:9TY403
|
2.6
|
79.8
|
1.0
|
OD2
|
C:ASP191
|
2.7
|
74.9
|
1.0
|
O
|
C:ASP191
|
2.7
|
74.9
|
1.0
|
O01
|
C:9TY403
|
2.9
|
79.8
|
1.0
|
CD
|
C:GLU195
|
3.1
|
71.0
|
1.0
|
C07
|
C:9TY403
|
3.2
|
79.8
|
1.0
|
H1
|
C:9TY403
|
3.4
|
79.8
|
1.0
|
H2
|
C:9TY403
|
3.5
|
79.8
|
1.0
|
OE1
|
C:GLU195
|
3.6
|
71.0
|
1.0
|
C
|
C:ASP191
|
3.6
|
74.9
|
1.0
|
O05
|
C:9TY403
|
3.7
|
79.8
|
1.0
|
CB
|
C:ASP191
|
3.8
|
74.9
|
1.0
|
C08
|
C:9TY403
|
3.9
|
79.8
|
1.0
|
HA
|
C:ASP191
|
4.0
|
74.9
|
1.0
|
CA
|
C:ASP191
|
4.1
|
74.9
|
1.0
|
OG
|
D:SER257
|
4.2
|
71.1
|
1.0
|
HB3
|
C:ASP191
|
4.3
|
74.9
|
1.0
|
HG3
|
C:GLU195
|
4.3
|
71.0
|
1.0
|
CG
|
C:GLU195
|
4.4
|
71.0
|
1.0
|
HA
|
C:LEU192
|
4.4
|
70.0
|
1.0
|
H3
|
C:9TY403
|
4.4
|
79.8
|
1.0
|
HB2
|
C:ASP191
|
4.4
|
74.9
|
1.0
|
H4
|
C:9TY403
|
4.5
|
79.8
|
1.0
|
HG
|
D:SER257
|
4.6
|
71.1
|
1.0
|
N
|
C:LEU192
|
4.6
|
70.0
|
1.0
|
HG2
|
C:GLU195
|
4.8
|
71.0
|
1.0
|
HD23
|
C:LEU192
|
4.8
|
70.0
|
1.0
|
MG
|
D:MG401
|
4.8
|
72.6
|
1.0
|
|
Magnesium binding site 6 out
of 24 in 6jcz
Go back to
Magnesium Binding Sites List in 6jcz
Magnesium binding site 6 out
of 24 in the Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg404
b:74.4
occ:1.00
|
OE2
|
C:GLU233
|
2.3
|
84.3
|
1.0
|
OE2
|
C:GLU227
|
2.4
|
79.0
|
1.0
|
CD
|
C:GLU233
|
2.9
|
84.3
|
1.0
|
O09
|
D:9TY404
|
3.1
|
80.6
|
1.0
|
HB2
|
D:SER194
|
3.1
|
72.2
|
1.0
|
HB3
|
D:SER194
|
3.2
|
72.2
|
1.0
|
HG2
|
C:GLU233
|
3.4
|
84.3
|
1.0
|
OE1
|
C:GLU233
|
3.6
|
84.3
|
1.0
|
CB
|
D:SER194
|
3.6
|
72.2
|
1.0
|
CD
|
C:GLU227
|
3.6
|
79.0
|
1.0
|
O01
|
D:9TY404
|
3.6
|
80.6
|
1.0
|
CG
|
C:GLU233
|
3.7
|
84.3
|
1.0
|
HG3
|
D:GLU195
|
3.8
|
73.0
|
1.0
|
C02
|
D:9TY404
|
3.8
|
80.6
|
1.0
|
HG
|
D:SER194
|
3.9
|
72.2
|
1.0
|
OG
|
D:SER194
|
4.1
|
72.2
|
1.0
|
OE1
|
C:GLU227
|
4.1
|
79.0
|
1.0
|
HA
|
D:ASP191
|
4.2
|
74.9
|
1.0
|
HG3
|
C:GLU233
|
4.3
|
84.3
|
1.0
|
OD1
|
D:ASP191
|
4.4
|
74.9
|
1.0
|
O
|
C:GLU227
|
4.6
|
79.0
|
1.0
|
CG
|
D:GLU195
|
4.6
|
73.0
|
1.0
|
HG3
|
C:GLU227
|
4.6
|
79.0
|
1.0
|
OE2
|
D:GLU195
|
4.6
|
73.0
|
1.0
|
HZ2
|
D:TRP198
|
4.7
|
71.1
|
1.0
|
CG
|
C:GLU227
|
4.7
|
79.0
|
1.0
|
HB2
|
C:GLU233
|
4.7
|
84.3
|
1.0
|
HG2
|
D:GLU195
|
4.8
|
73.0
|
1.0
|
CD
|
D:GLU195
|
4.9
|
73.0
|
1.0
|
CB
|
C:GLU233
|
4.9
|
84.3
|
1.0
|
CA
|
D:SER194
|
4.9
|
72.2
|
1.0
|
|
Magnesium binding site 7 out
of 24 in 6jcz
Go back to
Magnesium Binding Sites List in 6jcz
Magnesium binding site 7 out
of 24 in the Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg401
b:72.6
occ:1.00
|
OE2
|
D:GLU227
|
2.7
|
79.6
|
1.0
|
HG
|
C:SER194
|
2.7
|
71.3
|
1.0
|
O09
|
C:9TY403
|
3.1
|
79.8
|
1.0
|
OG
|
C:SER194
|
3.4
|
71.3
|
1.0
|
CD
|
D:GLU227
|
3.8
|
79.6
|
1.0
|
HB2
|
C:SER194
|
4.0
|
71.3
|
1.0
|
C02
|
C:9TY403
|
4.1
|
79.8
|
1.0
|
HG3
|
C:GLU195
|
4.1
|
71.0
|
1.0
|
CB
|
C:SER194
|
4.3
|
71.3
|
1.0
|
O01
|
C:9TY403
|
4.3
|
79.8
|
1.0
|
OE1
|
D:GLU227
|
4.3
|
79.6
|
1.0
|
OE1
|
D:GLU233
|
4.3
|
86.4
|
1.0
|
OE2
|
C:GLU195
|
4.4
|
71.0
|
1.0
|
CD
|
D:GLU233
|
4.6
|
86.4
|
1.0
|
HG2
|
D:GLU233
|
4.6
|
86.4
|
1.0
|
HB3
|
C:SER194
|
4.6
|
71.3
|
1.0
|
O
|
D:GLU227
|
4.6
|
79.6
|
1.0
|
OD1
|
C:ASP191
|
4.7
|
74.9
|
1.0
|
HZ2
|
C:TRP198
|
4.7
|
71.4
|
1.0
|
HA
|
C:ASP191
|
4.8
|
74.9
|
1.0
|
O
|
C:ASP191
|
4.8
|
74.9
|
1.0
|
MG
|
C:MG401
|
4.8
|
81.3
|
1.0
|
OE2
|
D:GLU233
|
4.9
|
86.4
|
1.0
|
HG3
|
D:GLU227
|
5.0
|
79.6
|
1.0
|
CG
|
C:GLU195
|
5.0
|
71.0
|
1.0
|
|
Magnesium binding site 8 out
of 24 in 6jcz
Go back to
Magnesium Binding Sites List in 6jcz
Magnesium binding site 8 out
of 24 in the Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg402
b:78.1
occ:1.00
|
O01
|
D:9TY404
|
2.0
|
80.6
|
1.0
|
OE1
|
D:GLU195
|
2.0
|
73.0
|
1.0
|
O06
|
D:9TY404
|
2.0
|
80.6
|
1.0
|
C04
|
D:9TY404
|
2.3
|
80.6
|
1.0
|
CD
|
D:GLU195
|
2.4
|
73.0
|
1.0
|
OE2
|
D:GLU195
|
2.4
|
73.0
|
1.0
|
C02
|
D:9TY404
|
2.6
|
80.6
|
1.0
|
C03
|
D:9TY404
|
2.8
|
80.6
|
1.0
|
O
|
D:ASP191
|
3.0
|
74.9
|
1.0
|
O05
|
D:9TY404
|
3.0
|
80.6
|
1.0
|
OG
|
C:SER257
|
3.3
|
72.4
|
1.0
|
OD2
|
D:ASP191
|
3.4
|
74.9
|
1.0
|
HG
|
C:SER257
|
3.7
|
72.4
|
1.0
|
CG
|
D:GLU195
|
3.7
|
73.0
|
1.0
|
O09
|
D:9TY404
|
3.8
|
80.6
|
1.0
|
HG3
|
D:GLU195
|
3.9
|
73.0
|
1.0
|
CG
|
D:ASP191
|
4.1
|
74.9
|
1.0
|
HA
|
C:SER257
|
4.1
|
72.4
|
1.0
|
HB2
|
D:GLU195
|
4.1
|
73.0
|
1.0
|
HD23
|
D:LEU192
|
4.2
|
70.5
|
1.0
|
C07
|
D:9TY404
|
4.2
|
80.6
|
1.0
|
C
|
D:ASP191
|
4.2
|
74.9
|
1.0
|
C08
|
D:9TY404
|
4.2
|
80.6
|
1.0
|
HA
|
D:LEU192
|
4.4
|
70.5
|
1.0
|
HG2
|
D:GLU195
|
4.4
|
73.0
|
1.0
|
CB
|
C:SER257
|
4.4
|
72.4
|
1.0
|
CB
|
D:GLU195
|
4.5
|
73.0
|
1.0
|
H1
|
D:9TY404
|
4.5
|
80.6
|
1.0
|
HG22
|
C:THR256
|
4.5
|
71.1
|
1.0
|
H4
|
D:9TY404
|
4.6
|
80.6
|
1.0
|
HB3
|
C:SER257
|
4.6
|
72.4
|
1.0
|
HB
|
C:THR256
|
4.6
|
71.1
|
1.0
|
CA
|
C:SER257
|
4.6
|
72.4
|
1.0
|
H2
|
D:9TY404
|
4.7
|
80.6
|
1.0
|
OD1
|
D:ASP191
|
4.7
|
74.9
|
1.0
|
H3
|
D:9TY404
|
4.7
|
80.6
|
1.0
|
HD21
|
D:LEU192
|
4.7
|
70.5
|
1.0
|
HB3
|
D:GLU195
|
4.8
|
73.0
|
1.0
|
HB3
|
D:ASP191
|
4.8
|
74.9
|
1.0
|
N
|
C:SER257
|
4.9
|
72.4
|
1.0
|
CD2
|
D:LEU192
|
4.9
|
70.5
|
1.0
|
CB
|
D:ASP191
|
4.9
|
74.9
|
1.0
|
O
|
C:THR256
|
4.9
|
71.1
|
1.0
|
HA
|
D:ASP191
|
5.0
|
74.9
|
1.0
|
|
Magnesium binding site 9 out
of 24 in 6jcz
Go back to
Magnesium Binding Sites List in 6jcz
Magnesium binding site 9 out
of 24 in the Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg401
b:75.7
occ:1.00
|
CD
|
E:GLU195
|
1.7
|
71.5
|
1.0
|
OE2
|
E:GLU195
|
1.8
|
71.5
|
1.0
|
O06
|
E:9TY403
|
2.1
|
78.0
|
1.0
|
O09
|
E:9TY403
|
2.2
|
78.0
|
1.0
|
HG3
|
E:GLU195
|
2.2
|
71.5
|
1.0
|
OE1
|
E:GLU195
|
2.2
|
71.5
|
1.0
|
O
|
E:ASP191
|
2.3
|
73.9
|
1.0
|
CG
|
E:GLU195
|
2.4
|
71.5
|
1.0
|
C02
|
E:9TY403
|
2.7
|
78.0
|
1.0
|
C04
|
E:9TY403
|
3.0
|
78.0
|
1.0
|
HG2
|
E:GLU195
|
3.1
|
71.5
|
1.0
|
C03
|
E:9TY403
|
3.3
|
78.0
|
1.0
|
HB2
|
E:GLU195
|
3.3
|
71.5
|
1.0
|
C
|
E:ASP191
|
3.5
|
73.9
|
1.0
|
CB
|
E:GLU195
|
3.5
|
71.5
|
1.0
|
O01
|
E:9TY403
|
3.5
|
78.0
|
1.0
|
HA
|
E:LEU192
|
3.6
|
69.5
|
1.0
|
OG
|
F:SER257
|
3.6
|
70.4
|
1.0
|
OD2
|
E:ASP191
|
3.7
|
73.9
|
1.0
|
CG
|
E:ASP191
|
3.9
|
73.9
|
1.0
|
OD1
|
E:ASP191
|
3.9
|
73.9
|
1.0
|
HB3
|
E:GLU195
|
4.0
|
71.5
|
1.0
|
HG
|
F:SER257
|
4.0
|
70.4
|
1.0
|
HD23
|
E:LEU192
|
4.0
|
69.5
|
1.0
|
O05
|
E:9TY403
|
4.2
|
78.0
|
1.0
|
H
|
E:GLU195
|
4.2
|
71.5
|
1.0
|
HA
|
F:SER257
|
4.3
|
70.4
|
1.0
|
N
|
E:LEU192
|
4.3
|
69.5
|
1.0
|
CA
|
E:LEU192
|
4.3
|
69.5
|
1.0
|
HA
|
E:ASP191
|
4.3
|
73.9
|
1.0
|
CA
|
E:ASP191
|
4.4
|
73.9
|
1.0
|
MG
|
E:MG404
|
4.6
|
65.8
|
1.0
|
N
|
E:GLU195
|
4.6
|
71.5
|
1.0
|
CB
|
F:SER257
|
4.6
|
70.4
|
1.0
|
C07
|
E:9TY403
|
4.6
|
78.0
|
1.0
|
CA
|
E:GLU195
|
4.7
|
71.5
|
1.0
|
HB3
|
F:SER257
|
4.7
|
70.4
|
1.0
|
CB
|
E:ASP191
|
4.7
|
73.9
|
1.0
|
C08
|
E:9TY403
|
4.7
|
78.0
|
1.0
|
HB2
|
E:SER194
|
4.9
|
72.1
|
1.0
|
O
|
E:LEU192
|
4.9
|
69.5
|
1.0
|
CD2
|
E:LEU192
|
4.9
|
69.5
|
1.0
|
CA
|
F:SER257
|
5.0
|
70.4
|
1.0
|
H1
|
E:9TY403
|
5.0
|
78.0
|
1.0
|
HB3
|
E:ASP191
|
5.0
|
73.9
|
1.0
|
HA
|
E:GLU195
|
5.0
|
71.5
|
1.0
|
|
Magnesium binding site 10 out
of 24 in 6jcz
Go back to
Magnesium Binding Sites List in 6jcz
Magnesium binding site 10 out
of 24 in the Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of Sulfolobus Solfataricus Ketol-Acid Reductoisomerase (Sso-Kari) in Complex with MG2+, Nadph, and Cpd at PH7.5 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg404
b:65.8
occ:1.00
|
O01
|
E:9TY403
|
2.8
|
78.0
|
1.0
|
O09
|
E:9TY403
|
3.0
|
78.0
|
1.0
|
OE2
|
F:GLU227
|
3.1
|
78.0
|
1.0
|
C02
|
E:9TY403
|
3.3
|
78.0
|
1.0
|
HB3
|
E:SER194
|
4.0
|
72.1
|
1.0
|
HB2
|
E:SER194
|
4.1
|
72.1
|
1.0
|
HG3
|
E:GLU195
|
4.1
|
71.5
|
1.0
|
CD
|
F:GLU227
|
4.2
|
78.0
|
1.0
|
OE1
|
F:GLU233
|
4.2
|
84.7
|
1.0
|
CB
|
E:SER194
|
4.5
|
72.1
|
1.0
|
CD
|
F:GLU233
|
4.5
|
84.7
|
1.0
|
HG2
|
F:GLU233
|
4.5
|
84.7
|
1.0
|
OE1
|
F:GLU227
|
4.5
|
78.0
|
1.0
|
MG
|
E:MG401
|
4.6
|
75.7
|
1.0
|
HG2
|
E:GLU195
|
4.6
|
71.5
|
1.0
|
OE2
|
E:GLU195
|
4.7
|
71.5
|
1.0
|
CG
|
E:GLU195
|
4.8
|
71.5
|
1.0
|
C03
|
E:9TY403
|
4.8
|
78.0
|
1.0
|
HB2
|
F:GLU233
|
4.8
|
84.7
|
1.0
|
OD1
|
E:ASP191
|
4.8
|
73.9
|
1.0
|
HG
|
E:SER194
|
4.8
|
72.1
|
1.0
|
H4
|
E:9TY403
|
4.8
|
78.0
|
1.0
|
O
|
F:GLU227
|
4.9
|
78.0
|
1.0
|
HZ2
|
E:TRP198
|
5.0
|
71.1
|
1.0
|
OE2
|
F:GLU233
|
5.0
|
84.7
|
1.0
|
CG
|
F:GLU233
|
5.0
|
84.7
|
1.0
|
|
Reference:
C.Y.Chen,
Y.C.Chang,
B.L.Lin,
K.F.Lin,
C.H.Huang,
D.L.Hsieh,
T.P.Ko,
M.D.Tsai.
Use of Cryo-Em to Uncover Structural Bases of pH Effect and Cofactor Bispecificity of Ketol-Acid Reductoisomerase. J. Am. Chem. Soc. V. 141 6136 2019.
ISSN: ESSN 1520-5126
PubMed: 30921515
DOI: 10.1021/JACS.9B01354
Page generated: Tue Oct 1 04:49:51 2024
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