Magnesium in PDB 6jnl: REF6 ZNF2-4-NAC004 Complex

The structure of REF6 ZNF2-4-NAC004 Complex, PDB code: 6jnl was solved by Q.Q.Yao, B.X.Wu, J.B.Ma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.15
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	89.160, 89.160, 72.603, 90.00, 90.00, 90.00
R / Rfree (%)	20.5 / 24.9

The structure of REF6 ZNF2-4-NAC004 Complex also contains other interesting chemical elements:

Zinc

(Zn)

3 atoms

The binding sites of Magnesium atom in the REF6 ZNF2-4-NAC004 Complex (pdb code 6jnl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the REF6 ZNF2-4-NAC004 Complex, PDB code: 6jnl:

Magnesium binding site 1 out of 1 in the REF6 ZNF2-4-NAC004 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of REF6 ZNF2-4-NAC004 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1404 b:54.6 occ:1.00 O A:TRP1300 2.4 53.6 1.0 O A:CYS1298 2.6 54.4 1.0 O A:CYS1303 2.8 61.3 1.0 C A:TRP1300 3.5 57.4 1.0 N A:CYS1303 3.6 70.1 1.0 C A:CYS1298 3.7 52.3 1.0 C A:CYS1303 3.9 63.4 1.0 N A:GLY1302 3.9 63.3 1.0 N A:TRP1300 4.0 54.4 1.0 C A:PRO1299 4.0 51.0 1.0 CA A:CYS1303 4.3 69.1 1.0 CA A:PRO1299 4.3 56.9 1.0 O A:PRO1299 4.3 56.1 1.0 CA A:TRP1300 4.4 49.7 1.0 N A:LYS1301 4.5 62.2 1.0 CA A:GLY1302 4.5 69.4 1.0 N A:PRO1299 4.5 53.7 1.0 CB A:CYS1303 4.5 69.6 1.0 C A:GLY1302 4.5 70.1 1.0 C A:LYS1301 4.6 64.6 1.0 CB A:CYS1298 4.6 56.4 1.0 CA A:LYS1301 4.6 69.8 1.0 CA A:CYS1298 4.7 50.2 1.0 N A:CYS1298 4.9 54.4 1.0

Q.Qiu, H.Mei, X.Deng, K.He, B.Wu, Q.Yao, J.Zhang, F.Lu, J.Ma, X.Cao. Dna Methylation Repels Targeting of Arabidopsis REF6. Nat Commun V. 10 2063 2019.
ISSN: ESSN 2041-1723
PubMed: 31048693
DOI: 10.1038/S41467-019-10026-1