Magnesium in PDB 6jt7: Crystal Structure of 452-453_DELETION Mutant of Fgam Synthetase

All present enzymatic activity of Crystal Structure of 452-453_DELETION Mutant of Fgam Synthetase:
6.3.5.3;

The structure of Crystal Structure of 452-453_DELETION Mutant of Fgam Synthetase, PDB code: 6jt7 was solved by N.Sharma, N.Ahalawat, P.Sandhu, J.Mondal, R.Anand, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.88 / 1.86
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	146.271, 146.271, 140.989, 90.00, 90.00, 120.00
R / Rfree (%)	12.3 / 15.6

The structure of Crystal Structure of 452-453_DELETION Mutant of Fgam Synthetase also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Magnesium atom in the Crystal Structure of 452-453_DELETION Mutant of Fgam Synthetase (pdb code 6jt7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of 452-453_DELETION Mutant of Fgam Synthetase, PDB code: 6jt7:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of 452-453_DELETION Mutant of Fgam Synthetase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of 452-453_DELETION Mutant of Fgam Synthetase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1552 b:12.3 occ:1.00 OD1 A:ASP884 2.0 12.2 1.0 OD1 A:ASP679 2.0 10.7 1.0 O1B A:ADP1532 2.0 12.6 1.0 OD1 A:ASN722 2.1 12.1 1.0 O A:HOH2173 2.1 11.7 1.0 O A:HOH1846 2.3 12.1 1.0 CG A:ASP884 3.0 13.3 1.0 CG A:ASP679 3.0 13.5 1.0 CG A:ASN722 3.2 13.1 1.0 PB A:ADP1532 3.2 12.1 1.0 OD2 A:ASP884 3.4 13.5 1.0 ND2 A:ASN722 3.7 12.8 1.0 O2B A:ADP1532 3.7 11.7 1.0 CB A:ASP679 3.8 11.2 1.0 O3B A:ADP1532 3.8 12.8 1.0 OD2 A:ASP679 3.9 12.3 1.0 O A:HOH2169 4.0 12.2 1.0 OG A:SER886 4.1 14.3 1.0 NE2 A:HIS883 4.2 15.1 1.0 O A:HOH2260 4.2 20.6 1.0 CA A:ASP679 4.3 12.0 1.0 CB A:ASP884 4.3 12.5 1.0 CD2 A:HIS883 4.4 11.2 1.0 O A:ASP884 4.4 16.2 1.0 O A:HOH1700 4.5 13.0 1.0 CB A:ASN722 4.5 13.5 1.0 O3A A:ADP1532 4.5 13.1 1.0 N A:ASP884 4.6 12.2 1.0 CA A:ASN722 4.7 12.0 1.0 CA A:ASP884 4.8 13.0 1.0 C A:ASP884 4.8 14.3 1.0 OE2 A:GLU718 4.8 14.8 1.0 O A:ASP679 4.9 12.9 1.0 CB A:SER886 5.0 14.2 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of 452-453_DELETION Mutant of Fgam Synthetase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of 452-453_DELETION Mutant of Fgam Synthetase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1553 b:13.7 occ:1.00 OE2 A:GLU718 2.0 14.8 1.0 O2B A:ADP1532 2.0 11.7 1.0 O A:HOH1822 2.1 11.4 1.0 O A:HOH1725 2.1 13.7 1.0 O A:HOH1974 2.1 13.9 1.0 O A:HOH1755 2.2 13.8 1.0 CD A:GLU718 3.1 15.1 1.0 PB A:ADP1532 3.3 12.1 1.0 OE1 A:GLU718 3.5 15.4 1.0 O3B A:ADP1532 3.6 12.8 1.0 O A:HOH2067 3.9 13.1 1.0 O A:HOH1846 3.9 12.1 1.0 ND2 A:ASN722 4.1 12.8 1.0 O3A A:ADP1532 4.1 13.1 1.0 O A:HOH1691 4.2 17.4 1.0 O2A A:ADP1532 4.2 12.9 1.0 OE1 A:GLU699 4.3 19.6 1.0 O A:ILE697 4.4 11.9 1.0 CG A:GLU718 4.4 13.6 1.0 OD2 A:ASP887 4.4 17.7 1.0 O1B A:ADP1532 4.5 12.6 1.0 OG A:SER886 4.6 14.3 1.0 CB A:SER886 4.7 14.2 1.0 PA A:ADP1532 4.8 13.1 1.0 O A:GLU699 5.0 13.4 1.0 O A:HOH2083 5.0 13.3 1.0 N A:GLU699 5.0 13.1 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of 452-453_DELETION Mutant of Fgam Synthetase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of 452-453_DELETION Mutant of Fgam Synthetase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1554 b:13.7 occ:1.00 O1A A:ADP1532 2.0 13.3 1.0 O A:HOH1676 2.1 12.7 1.0 O3B A:ADP1532 2.1 12.8 1.0 O A:HOH1700 2.1 13.0 1.0 O A:HOH1915 2.1 14.0 1.0 O A:HOH2083 2.2 13.3 1.0 PA A:ADP1532 3.2 13.1 1.0 PB A:ADP1532 3.3 12.1 1.0 O3A A:ADP1532 3.5 13.1 1.0 O2A A:ADP1532 4.0 12.9 1.0 O A:HOH1755 4.0 13.8 1.0 O A:HOH2240 4.1 16.7 1.0 OG A:SER886 4.1 14.3 1.0 O A:HOH2173 4.1 11.7 1.0 O1B A:ADP1532 4.1 12.6 1.0 OE2 A:GLU896 4.1 12.8 1.0 OE1 A:GLU896 4.2 14.4 1.0 O A:HOH2169 4.4 12.2 1.0 O2B A:ADP1532 4.4 11.7 1.0 O5' A:ADP1532 4.5 12.5 1.0 O A:VAL646 4.5 13.1 1.0 O A:HOH2465 4.5 16.0 1.0 OD2 A:ASP887 4.6 17.7 1.0 O A:THR645 4.6 14.7 1.0 CD A:GLU896 4.6 14.5 1.0 O A:ASP887 4.7 14.5 1.0 C5' A:ADP1532 4.8 12.6 1.0 CB A:ASP887 5.0 16.4 1.0

N.Sharma, N.Ahalawat, P.Sandhu, J.Mondal, R.Anand. Crystal Structure of 452-453_DELETION Mutant of Fgam Synthetase To Be Published.