Magnesium in PDB 6jt8: Crystal Structure of 450-451_DELETION Mutant of Fgam Synthetase

All present enzymatic activity of Crystal Structure of 450-451_DELETION Mutant of Fgam Synthetase:
6.3.5.3;

The structure of Crystal Structure of 450-451_DELETION Mutant of Fgam Synthetase, PDB code: 6jt8 was solved by N.Sharma, N.Ahalawat, P.Sandhu, J.Mondal, R.Anand, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.17 / 1.90
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	147.151, 147.151, 141.346, 90.00, 90.00, 120.00
R / Rfree (%)	12.5 / 15.9

The binding sites of Magnesium atom in the Crystal Structure of 450-451_DELETION Mutant of Fgam Synthetase (pdb code 6jt8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of 450-451_DELETION Mutant of Fgam Synthetase, PDB code: 6jt8:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of 450-451_DELETION Mutant of Fgam Synthetase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of 450-451_DELETION Mutant of Fgam Synthetase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1348 b:10.0 occ:1.00 O1B A:ADP1312 2.0 8.8 1.0 OD1 A:ASP884 2.0 10.4 1.0 OD1 A:ASP679 2.0 10.6 1.0 OD1 A:ASN722 2.1 9.3 1.0 O A:HOH2078 2.1 9.0 1.0 O A:HOH1634 2.2 9.3 1.0 CG A:ASP679 3.0 10.3 1.0 CG A:ASP884 3.0 10.7 1.0 CG A:ASN722 3.2 10.1 1.0 PB A:ADP1312 3.2 9.5 1.0 OD2 A:ASP884 3.4 10.7 1.0 ND2 A:ASN722 3.6 9.8 1.0 O2B A:ADP1312 3.7 9.0 1.0 O3B A:ADP1312 3.8 9.9 1.0 CB A:ASP679 3.8 9.3 1.0 OD2 A:ASP679 3.9 9.8 1.0 O A:HOH1918 4.0 8.5 1.0 OG A:SER886 4.1 11.5 1.0 O A:HOH2326 4.2 16.5 1.0 NE2 A:HIS883 4.2 12.3 1.0 CA A:ASP679 4.3 9.6 1.0 CD2 A:HIS883 4.4 9.3 1.0 CB A:ASP884 4.4 10.2 1.0 O A:HOH1535 4.4 9.2 1.0 O A:ASP884 4.4 11.7 1.0 O3A A:ADP1312 4.5 9.8 1.0 CB A:ASN722 4.5 10.5 1.0 N A:ASP884 4.6 10.3 1.0 C A:ASP884 4.7 11.9 1.0 CA A:ASN722 4.7 9.8 1.0 OE2 A:GLU718 4.8 10.8 1.0 CA A:ASP884 4.8 10.9 1.0 O A:ASP679 5.0 11.4 1.0 CB A:SER886 5.0 11.5 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of 450-451_DELETION Mutant of Fgam Synthetase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of 450-451_DELETION Mutant of Fgam Synthetase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1349 b:10.9 occ:1.00 O1A A:ADP1312 2.0 10.4 1.0 O3B A:ADP1312 2.1 9.9 1.0 O A:HOH1499 2.1 9.6 1.0 O A:HOH1535 2.1 9.2 1.0 O A:HOH1820 2.2 10.3 1.0 O A:HOH1989 2.2 9.2 1.0 PA A:ADP1312 3.1 10.4 1.0 PB A:ADP1312 3.3 9.5 1.0 O3A A:ADP1312 3.5 9.8 1.0 O2A A:ADP1312 3.9 11.6 1.0 O A:HOH1753 4.0 10.6 1.0 O A:HOH2082 4.1 13.3 1.0 OG A:SER886 4.1 11.5 1.0 O1B A:ADP1312 4.1 8.8 1.0 O A:HOH2078 4.1 9.0 1.0 OE1 A:GLU896 4.2 10.1 1.0 OE2 A:GLU896 4.2 10.4 1.0 O A:HOH1918 4.4 8.5 1.0 O5' A:ADP1312 4.5 9.5 1.0 O2B A:ADP1312 4.5 9.0 1.0 O A:THR645 4.5 11.5 1.0 O A:VAL646 4.6 11.0 1.0 O A:HOH2440 4.6 12.8 1.0 OD2 A:ASP887 4.6 15.6 1.0 CD A:GLU896 4.6 10.9 1.0 O A:ASP887 4.7 11.7 1.0 C5' A:ADP1312 4.8 11.0 1.0 CB A:ASP887 5.0 12.8 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of 450-451_DELETION Mutant of Fgam Synthetase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of 450-451_DELETION Mutant of Fgam Synthetase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1350 b:10.7 occ:1.00 O2B A:ADP1312 2.0 9.0 1.0 OE2 A:GLU718 2.0 10.8 1.0 O A:HOH1740 2.1 11.8 1.0 O A:HOH1899 2.1 9.8 1.0 O A:HOH1556 2.1 11.3 1.0 O A:HOH1753 2.1 10.6 1.0 CD A:GLU718 3.1 11.7 1.0 PB A:ADP1312 3.3 9.5 1.0 OE1 A:GLU718 3.5 11.6 1.0 O3B A:ADP1312 3.6 9.9 1.0 O A:HOH1634 4.0 9.3 1.0 O A:HOH1916 4.0 10.5 1.0 ND2 A:ASN722 4.1 9.8 1.0 O A:HOH1541 4.1 16.5 1.0 O3A A:ADP1312 4.2 9.8 1.0 O2A A:ADP1312 4.2 11.6 1.0 O A:ILE697 4.4 10.9 1.0 OD2 A:ASP887 4.4 15.6 1.0 CG A:GLU718 4.4 10.9 1.0 OE1 A:GLU699 4.4 16.9 1.0 O1B A:ADP1312 4.5 8.8 1.0 OG A:SER886 4.5 11.5 1.0 CB A:SER886 4.7 11.5 1.0 PA A:ADP1312 4.8 10.4 1.0 O A:GLU699 4.9 12.2 1.0 O A:HOH1989 5.0 9.2 1.0

N.Sharma, N.Ahalawat, P.Sandhu, J.Mondal, R.Anand. Crystal Structure of 450-451_DELETION Mutant of Fgam Synthetase To Be Published.