Magnesium in PDB 6jtg: Structural Insights Into G Domain Dimerization and Pathogenic Mutations of OPA1

Enzymatic activity of Structural Insights Into G Domain Dimerization and Pathogenic Mutations of OPA1

All present enzymatic activity of Structural Insights Into G Domain Dimerization and Pathogenic Mutations of OPA1:
3.6.5.5;

Protein crystallography data

The structure of Structural Insights Into G Domain Dimerization and Pathogenic Mutations of OPA1, PDB code: 6jtg was solved by L.Yan, J.Hu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	46.35 / 2.40
*Space group*	P 4₃ 2₁ 2
*Cell size a, b, c (Å), α, β, γ (°)*	77.890, 77.890, 171.547, 90.00, 90.00, 90.00
*R / R_free (%)*	19.9 / 24.4

Other elements in 6jtg:

The structure of Structural Insights Into G Domain Dimerization and Pathogenic Mutations of OPA1 also contains other interesting chemical elements:

Fluorine	(F)	3 atoms
Potassium	(K)	1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structural Insights Into G Domain Dimerization and Pathogenic Mutations of OPA1 (pdb code 6jtg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structural Insights Into G Domain Dimerization and Pathogenic Mutations of OPA1, PDB code: 6jtg:

Magnesium binding site 1 out of 1 in 6jtg

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Magnesium Binding Sites List in 6jtg

Magnesium binding site 1 out of 1 in the Structural Insights Into G Domain Dimerization and Pathogenic Mutations of OPA1

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structural Insights Into G Domain Dimerization and Pathogenic Mutations of OPA1 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg402 b:31.9 occ:1.00	OG1	A:THR40	1.9	21.6	1.0
	F3	A:BEF403	2.0	7.0	1.0
	OG1	A:THR61	2.2	21.3	1.0
	O3B	A:GDP401	2.3	18.4	1.0
	CB	A:THR61	3.1	21.7	1.0
	CB	A:THR40	3.2	22.5	1.0
	BE	A:BEF403	3.4	6.9	1.0
	OD2	A:ASP136	3.4	21.1	1.0
	PB	A:GDP401	3.5	21.3	1.0
	N	A:THR40	3.7	20.8	1.0
	O1B	A:GDP401	3.7	18.6	1.0
	OD1	A:ASP136	3.9	26.7	1.0
	CA	A:THR40	4.0	25.2	1.0
	CG2	A:THR61	4.0	20.9	1.0
	CG	A:ASP136	4.0	26.6	1.0
	O	A:HOH545	4.2	19.1	1.0
	F1	A:BEF403	4.2	7.1	1.0
	CG2	A:THR40	4.2	19.4	1.0
	O	A:LEU137	4.3	24.5	1.0
	CA	A:THR61	4.3	22.2	1.0
	N	A:THR61	4.3	25.9	1.0
	F2	A:BEF403	4.4	6.9	1.0
	CE	A:LYS39	4.4	19.2	1.0
	O2B	A:GDP401	4.5	22.8	1.0
	CB	A:LYS39	4.5	18.1	1.0
	O	A:PRO53	4.5	27.0	1.0
	O1A	A:GDP401	4.6	23.4	1.0
	O3A	A:GDP401	4.7	24.6	1.0
	C	A:LYS39	4.7	21.1	1.0
	NZ	A:LYS39	4.8	16.8	1.0
	O	A:HOH551	4.9	19.1	1.0
	O2A	A:GDP401	5.0	21.0	1.0
	PA	A:GDP401	5.0	22.3	1.0

Reference:

L.Yan, J.Hu. Structural Insights Into G Domain Dimerization and Pathogenic Mutations of OPA1 To Be Published.

Page generated: Tue Oct 1 05:46:29 2024

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