Magnesium in PDB 6k16: Crystal Structure of Sesquisabinene B Synthase 1 From Santalum Album

Protein crystallography data

The structure of Crystal Structure of Sesquisabinene B Synthase 1 From Santalum Album, PDB code: 6k16 was solved by S.Singh, H.V.Thulasiram, K.A.Kulkarni, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.57 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 141.059, 85.821, 53.399, 90.00, 97.56, 90.00
R / Rfree (%) 19.7 / 22.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Sesquisabinene B Synthase 1 From Santalum Album (pdb code 6k16). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Sesquisabinene B Synthase 1 From Santalum Album, PDB code: 6k16:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6k16

Go back to Magnesium Binding Sites List in 6k16
Magnesium binding site 1 out of 2 in the Crystal Structure of Sesquisabinene B Synthase 1 From Santalum Album


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Sesquisabinene B Synthase 1 From Santalum Album within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:67.4
occ:1.00
OD1 A:ASP316 2.3 54.3 1.0
OD2 A:ASP320 2.5 78.2 1.0
OD1 A:ASP320 2.9 83.0 1.0
CG A:ASP320 3.1 73.5 1.0
CG A:ASP316 3.3 54.4 1.0
OD2 A:ASP316 3.5 71.0 1.0
OE1 A:GLU394 3.8 82.1 1.0
CE1 A:TYR391 4.4 33.5 1.0
CB A:ASP320 4.6 57.0 1.0
CD1 A:TYR391 4.6 42.6 1.0
CB A:ASP316 4.6 45.3 1.0
O A:ASP316 4.7 40.7 1.0

Magnesium binding site 2 out of 2 in 6k16

Go back to Magnesium Binding Sites List in 6k16
Magnesium binding site 2 out of 2 in the Crystal Structure of Sesquisabinene B Synthase 1 From Santalum Album


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Sesquisabinene B Synthase 1 From Santalum Album within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:66.6
occ:1.00
O A:HOH738 3.0 45.1 1.0
CG1 A:ILE340 4.5 41.4 1.0
O A:ILE340 4.6 44.9 1.0
OD1 A:ASN341 4.6 72.6 1.0
CA A:ASN341 4.7 42.4 1.0
CD1 A:ILE340 4.8 40.6 1.0
C A:ILE340 4.8 42.5 1.0
N A:ASN341 4.9 42.0 1.0

Reference:

S.Singh, H.V.Thulasiram, K.A.Kulkarni. Crystal Structure of Sesquisabinene B Synthase 1 From Santalum Album To Be Published.
Page generated: Mon Dec 14 23:04:08 2020

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