Magnesium in PDB 6k32: Rdrp Complex

The binding sites of Magnesium atom in the Rdrp Complex (pdb code 6k32). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Rdrp Complex, PDB code: 6k32:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Rdrp Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rdrp Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1301 b:85.6 occ:1.00 OD2 A:ASP680 2.3 0.2 1.0 O2B A:UTP1306 2.3 91.4 1.0 OD2 A:ASP547 2.3 0.8 1.0 OD1 A:ASP680 2.4 0.2 1.0 O1A A:UTP1306 2.6 91.4 1.0 CG A:ASP680 2.6 0.2 1.0 CG A:ASP547 2.6 0.8 1.0 OD1 A:ASP547 3.0 0.8 1.0 MG A:MG1305 3.4 85.5 1.0 CB A:ASP547 3.5 0.8 1.0 O A:VAL548 3.5 0.1 1.0 PA A:UTP1306 3.6 91.4 1.0 PB A:UTP1306 3.6 91.4 1.0 O2A A:UTP1306 3.7 91.4 1.0 C A:VAL548 3.8 0.1 1.0 N A:ALA549 4.0 0.8 1.0 O3A A:UTP1306 4.0 91.4 1.0 CA A:ASP547 4.0 0.8 1.0 CB A:ASP680 4.1 0.2 1.0 N A:VAL548 4.2 0.1 1.0 O1B A:UTP1306 4.2 91.4 1.0 C A:ASP547 4.4 0.8 1.0 OD1 A:ASP681 4.5 0.7 1.0 O3G A:UTP1306 4.6 91.4 1.0 CA A:VAL548 4.7 0.1 1.0 O3B A:UTP1306 4.8 91.4 1.0 C A:ASP680 5.0 0.2 1.0 O5' A:UTP1306 5.0 91.4 1.0

Magnesium binding site 2 out of 2 in the Rdrp Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Rdrp Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1305 b:85.5 occ:1.00 O1A A:UTP1306 2.6 91.4 1.0 OD1 A:ASP680 3.1 0.2 1.0 C3' p:G3 3.2 94.1 1.0 OD1 A:ASP681 3.2 0.7 1.0 MG A:MG1301 3.4 85.6 1.0 C5' p:G3 3.6 94.1 1.0 C4' p:G3 3.8 94.1 1.0 O3' p:G3 3.9 94.1 1.0 CG A:ASP680 4.0 0.2 1.0 PA A:UTP1306 4.1 91.4 1.0 C2' p:G3 4.1 94.1 1.0 OD2 A:ASP547 4.2 0.8 1.0 O2B A:UTP1306 4.2 91.4 1.0 CG A:ASP681 4.3 0.7 1.0 N A:ASP680 4.5 0.2 1.0 OD1 A:ASP547 4.5 0.8 1.0 O5' A:UTP1306 4.6 91.4 1.0 O4' A:UTP1306 4.6 91.4 1.0 OD2 A:ASP680 4.7 0.2 1.0 C4' A:UTP1306 4.7 91.4 1.0 OD2 A:ASP681 4.7 0.7 1.0 O2' p:G3 4.7 94.1 1.0 OP1 p:G3 4.8 94.1 1.0 CB A:ASP680 4.8 0.2 1.0 CG A:ASP547 4.8 0.8 1.0 O3A A:UTP1306 4.8 91.4 1.0 O5' p:G3 4.9 94.1 1.0

X.Li, L.Wang, X.Wang, W.Chen, T.Yang, J.Song, H.Liu, L.Cheng. Structure of Rdrps Within A Transcribing Dsrna Virus Provides Insights Into the Mechanisms of Rna Synthesis. J.Mol.Biol. 2019.
ISSN: ESSN 1089-8638
PubMed: 31629769
DOI: 10.1016/J.JMB.2019.09.015