Magnesium in PDB 6k7k: Cryo-Em Structure of the Human P4-Type Flippase ATP8A1-CDC50 (E1-Adp- Pi State)

Enzymatic activity of Cryo-Em Structure of the Human P4-Type Flippase ATP8A1-CDC50 (E1-Adp- Pi State)

All present enzymatic activity of Cryo-Em Structure of the Human P4-Type Flippase ATP8A1-CDC50 (E1-Adp- Pi State):
7.6.2.1;

Other elements in 6k7k:

The structure of Cryo-Em Structure of the Human P4-Type Flippase ATP8A1-CDC50 (E1-Adp- Pi State) also contains other interesting chemical elements:

Fluorine (F) 4 atoms
Aluminium (Al) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of the Human P4-Type Flippase ATP8A1-CDC50 (E1-Adp- Pi State) (pdb code 6k7k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the Human P4-Type Flippase ATP8A1-CDC50 (E1-Adp- Pi State), PDB code: 6k7k:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6k7k

Go back to Magnesium Binding Sites List in 6k7k
Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the Human P4-Type Flippase ATP8A1-CDC50 (E1-Adp- Pi State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Human P4-Type Flippase ATP8A1-CDC50 (E1-Adp- Pi State) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1203

b:78.1
occ:1.00
O2B A:ADP1201 2.8 0.8 1.0
OE2 A:GLU807 2.8 69.4 1.0
CD A:GLU807 4.1 69.4 1.0
PB A:ADP1201 4.2 0.8 1.0
ND2 A:ASN789 4.3 61.5 1.0
F1 A:ALF1202 4.6 65.5 1.0
O1A A:ADP1201 4.7 0.8 1.0
O1B A:ADP1201 4.7 0.8 1.0
OE1 A:GLU807 4.8 69.4 1.0
CG A:ASN789 5.0 61.5 1.0

Magnesium binding site 2 out of 2 in 6k7k

Go back to Magnesium Binding Sites List in 6k7k
Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the Human P4-Type Flippase ATP8A1-CDC50 (E1-Adp- Pi State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Human P4-Type Flippase ATP8A1-CDC50 (E1-Adp- Pi State) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1204

b:60.6
occ:1.00
F3 A:ALF1202 2.0 65.5 1.0
O A:THR411 2.1 62.8 1.0
OD1 A:ASP786 2.2 53.8 1.0
OE1 A:GLU807 2.7 69.4 1.0
OD1 A:ASP409 2.8 57.9 1.0
F1 A:ALF1202 2.9 65.5 1.0
CG A:ASP786 3.1 53.8 1.0
C A:THR411 3.3 62.8 1.0
OD2 A:ASP786 3.3 53.8 1.0
AL A:ALF1202 3.4 65.5 1.0
CD A:GLU807 3.7 69.4 1.0
N A:GLY787 3.8 56.7 1.0
OE2 A:GLU807 3.9 69.4 1.0
CA A:GLY412 4.0 57.8 1.0
CG A:ASP409 4.0 57.9 1.0
N A:GLY412 4.1 57.8 1.0
CA A:GLY787 4.2 56.7 1.0
CA A:THR411 4.4 62.8 1.0
OD2 A:ASP790 4.4 55.6 1.0
CB A:ASP786 4.5 53.8 1.0
CB A:THR411 4.5 62.8 1.0
C A:GLY412 4.5 57.8 1.0
F2 A:ALF1202 4.5 65.5 1.0
CG2 A:THR411 4.6 62.8 1.0
C A:ASP786 4.6 53.8 1.0
N A:ASP786 4.6 53.8 1.0
OD2 A:ASP409 4.7 57.9 1.0
N A:THR411 4.7 62.8 1.0
N A:THR413 4.7 52.2 1.0
ND2 A:ASN417 4.8 76.7 1.0
CA A:ASP786 4.8 53.8 1.0
OG1 A:THR413 5.0 52.2 1.0

Reference:

M.Hiraizumi, K.Yamashita, T.Nishizawa, O.Nureki. Cryo-Em Structures Capture the Transport Cycle of the P4-Atpase Flippase. Science V. 365 1149 2019.
ISSN: ESSN 1095-9203
PubMed: 31416931
DOI: 10.1126/SCIENCE.AAY3353
Page generated: Mon Dec 14 23:04:34 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy