Magnesium in PDB 6k85: The Closed State of RGLG1 Mutant-D338A

All present enzymatic activity of The Closed State of RGLG1 Mutant-D338A:
2.3.2.27;

The structure of The Closed State of RGLG1 Mutant-D338A, PDB code: 6k85 was solved by Q.Wang, Y.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.72 / 1.61
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	45.692, 72.871, 79.444, 90.00, 90.00, 90.00
R / Rfree (%)	19.5 / 22.4

The binding sites of Magnesium atom in the The Closed State of RGLG1 Mutant-D338A (pdb code 6k85). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Closed State of RGLG1 Mutant-D338A, PDB code: 6k85:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Closed State of RGLG1 Mutant-D338A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Closed State of RGLG1 Mutant-D338A within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:26.6 occ:1.00 O B:HOH722 2.0 28.3 1.0 OG B:SER166 2.0 28.4 1.0 OD1 B:ASP286 2.1 25.6 1.0 O B:HOH641 2.1 26.2 1.0 O B:HOH737 2.1 29.9 1.0 OG1 B:THR164 2.2 26.9 1.0 CG B:ASP286 3.1 28.2 1.0 CB B:SER166 3.2 32.7 1.0 CB B:THR164 3.2 27.2 1.0 OD2 B:ASP286 3.4 30.7 1.0 CG2 B:THR164 3.9 26.0 1.0 OD2 B:ASP162 3.9 27.1 1.0 OD1 B:ASP162 4.0 26.5 1.0 OG1 B:THR258 4.0 28.1 1.0 C B:ASP286 4.3 28.5 1.0 CA B:SER166 4.3 30.9 1.0 CG B:ASP162 4.3 26.5 1.0 O B:HOH673 4.4 28.3 1.0 O B:ASP286 4.4 30.3 1.0 N B:GLY287 4.4 27.4 1.0 O B:HOH651 4.4 32.8 1.0 CB B:ASP286 4.4 26.0 1.0 N B:SER166 4.4 27.3 1.0 CA B:THR164 4.5 25.7 1.0 O B:HOH697 4.6 30.8 1.0 CA B:GLY287 4.7 27.1 1.0 ND2 B:ASN167 4.7 24.2 1.0 CA B:ASP286 4.8 27.5 1.0 N B:ASN167 4.8 26.5 1.0 C B:THR164 4.8 25.2 1.0 C B:SER166 4.8 31.4 1.0 N B:ASP286 4.9 26.9 1.0 O B:THR164 4.9 27.2 1.0

Magnesium binding site 2 out of 2 in the The Closed State of RGLG1 Mutant-D338A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Closed State of RGLG1 Mutant-D338A within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:31.3 occ:1.00 OD1 B:ASP207 2.0 29.5 1.0 O B:HOH628 2.1 25.9 1.0 O B:HOH695 2.1 27.1 1.0 O B:HOH657 2.1 29.7 1.0 O B:HOH709 2.2 28.8 1.0 OD1 B:ASP205 2.2 29.6 1.0 CG B:ASP207 3.0 31.8 1.0 CG B:ASP205 3.2 30.2 1.0 OD2 B:ASP205 3.4 29.6 1.0 OD2 B:ASP207 3.5 31.7 1.0 N B:ASP207 4.1 30.6 1.0 O B:HOH739 4.1 29.9 1.0 OD1 B:ASN156 4.1 29.2 1.0 O B:HOH763 4.3 33.5 1.0 O B:HOH677 4.3 28.4 1.0 CB B:ASP207 4.3 32.2 1.0 N B:ASN208 4.3 30.6 1.0 CA B:ASP207 4.5 30.9 1.0 O B:HOH634 4.5 33.5 1.0 N B:LEU209 4.6 29.5 1.0 CB B:ASP205 4.6 28.6 1.0 N B:GLU206 4.6 32.9 1.0 C B:ASP207 4.6 31.5 1.0 CG B:LEU209 4.6 26.1 1.0 CD1 B:LEU209 4.7 27.9 1.0 O B:HOH698 4.7 32.9 1.0 CG B:ASN156 4.8 27.9 1.0 C B:ASP205 4.8 30.6 1.0 CB B:LEU209 4.9 27.5 1.0 CA B:ASP205 4.9 28.0 1.0 ND2 B:ASN156 4.9 29.6 1.0

Q.Wang, Y.Wu. The Closed State of RGLG1 Mutant-D338A To Be Published.