Magnesium in PDB 6k89: The Closed State of RGLG1 Vwa Domain

Enzymatic activity of The Closed State of RGLG1 Vwa Domain

All present enzymatic activity of The Closed State of RGLG1 Vwa Domain:
2.3.2.27;

Protein crystallography data

The structure of The Closed State of RGLG1 Vwa Domain, PDB code: 6k89 was solved by Q.Wang, Y.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.04 / 1.69
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 45.619, 72.935, 80.077, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 23.1

Other elements in 6k89:

The structure of The Closed State of RGLG1 Vwa Domain also contains other interesting chemical elements:

Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Closed State of RGLG1 Vwa Domain (pdb code 6k89). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Closed State of RGLG1 Vwa Domain, PDB code: 6k89:

Magnesium binding site 1 out of 1 in 6k89

Go back to Magnesium Binding Sites List in 6k89
Magnesium binding site 1 out of 1 in the The Closed State of RGLG1 Vwa Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Closed State of RGLG1 Vwa Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg501

b:30.6
occ:1.00
OG B:SER166 2.1 27.7 1.0
OD1 B:ASP286 2.3 25.2 1.0
O B:HOH610 2.3 22.6 1.0
OG1 B:THR164 2.3 23.5 1.0
O B:HOH731 2.4 34.2 1.0
CG B:ASP286 3.3 27.2 1.0
CB B:SER166 3.4 30.6 1.0
CB B:THR164 3.5 22.6 1.0
OD2 B:ASP286 3.6 27.3 1.0
OG1 B:THR258 3.8 23.3 1.0
OD2 B:ASP162 3.9 28.0 1.0
OD1 B:ASP162 3.9 20.8 1.0
N B:GLY287 4.0 20.8 1.0
CG2 B:THR164 4.2 23.1 1.0
C B:ASP286 4.2 25.6 1.0
CA B:GLY287 4.3 24.7 1.0
CG B:ASP162 4.3 21.7 1.0
CA B:SER166 4.4 29.5 1.0
O B:ASP286 4.4 25.2 1.0
O B:HOH696 4.5 34.4 1.0
N B:SER166 4.5 25.9 1.0
CB B:ASP286 4.5 22.5 1.0
O B:HOH688 4.6 33.0 1.0
N B:ASN167 4.7 27.6 1.0
CA B:THR164 4.7 21.0 1.0
CA B:ASP286 4.7 24.7 1.0
C B:SER166 4.7 28.5 1.0
N B:ASP286 4.7 19.8 1.0
ND2 B:ASN167 4.8 22.9 1.0
C B:THR164 4.8 24.4 1.0
O B:HOH758 4.9 35.2 1.0
O B:THR164 4.9 23.3 1.0

Reference:

Q.Wang, Y.Wu. The Closed State of RGLG1 Vwa Domain To Be Published.
Page generated: Mon Dec 14 23:04:44 2020

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